RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
HMGB1-202ENST00000339872 MUC12Q9UKN1 5478 aa4.64□□□□□ -1.67
HMGB1-202ENST00000339872 KRTAP9-6A0A140TA67 174 aa4.62□□□□□ -1.67
HMGB1-202ENST00000339872 KRTAP19-3Q7Z4W3 81 aa4.62□□□□□ -1.67
HMGB1-202ENST00000339872 SYNE2Q8WXH0 6885 aaKnown RBP4.58□□□□□ -1.68
HMGB1-202ENST00000339872 MT1GP13640 62 aa4.57□□□□□ -1.68
HMGB1-202ENST00000339872 KRTAP5-9P26371 169 aa4.57□□□□□ -1.68
HMGB1-202ENST00000339872 MT1MQ8N339 61 aa4.55□□□□□ -1.68
HMGB1-202ENST00000339872 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-202ENST00000339872 LCE5AQ5TCM9 118 aa4.52□□□□□ -1.69
HMGB1-202ENST00000339872 KRTAP9-6A8MVA2 160 aa4.51□□□□□ -1.69
HMGB1-202ENST00000339872 KRTAP4-3Q9BYR4 195 aa4.5□□□□□ -1.69
HMGB1-202ENST00000339872 LCE1AQ5T7P2 110 aa4.46□□□□□ -1.7
HMGB1-202ENST00000339872 KRTAP6-3Q3LI67 103 aa4.44□□□□□ -1.7
HMGB1-202ENST00000339872 SPRR2EP22531 72 aa4.43□□□□□ -1.7
HMGB1-202ENST00000339872 SPRR2BP35325 72 aa4.43□□□□□ -1.7
HMGB1-202ENST00000339872 SPRR2AP35326 72 aa4.43□□□□□ -1.7
HMGB1-202ENST00000339872 MDN1Q9NU22 5596 aa4.41□□□□□ -1.7
HMGB1-202ENST00000339872 H3BS24 57 aa4.3□□□□□ -1.72
HMGB1-202ENST00000339872 DSTQ03001 7570 aaKnown RBP4.29□□□□□ -1.72
HMGB1-202ENST00000339872 LCE3BQ5TA77 95 aa4.28□□□□□ -1.72
HMGB1-202ENST00000339872 SPRR2DP22532 72 aa4.26□□□□□ -1.73
HMGB1-202ENST00000339872 KRTAP9-7A8MTY7 169 aa4.26□□□□□ -1.73
HMGB1-202ENST00000339872 KRTAP9-9Q9BYP9 154 aa4.19□□□□□ -1.74
HMGB1-202ENST00000339872 KRTAP9-4Q9BYQ2 154 aa4.19□□□□□ -1.74
HMGB1-202ENST00000339872 KRTAP2-3P0C7H8 128 aa4.17□□□□□ -1.74
HMGB1-202ENST00000339872 KRTAP2-4Q9BYR9 128 aa4.17□□□□□ -1.74
HMGB1-202ENST00000339872 KRTAP2-1Q9BYU5 128 aa4.17□□□□□ -1.74
HMGB1-202ENST00000339872 A0A0A0MQY5 61 aa4.14□□□□□ -1.75
HMGB1-202ENST00000339872 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.76
HMGB1-202ENST00000339872 NEBP20929 6669 aa4.07□□□□□ -1.76
HMGB1-202ENST00000339872 KRTAP5-5Q701N2 237 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-202ENST00000339872 KRTAP4-12Q9BQ66 201 aa4.05□□□□□ -1.76
HMGB1-202ENST00000339872 MT1AP04731 61 aa4.03□□□□□ -1.77
HMGB1-202ENST00000339872 KRTAP6-1Q3LI64 71 aa4.01□□□□□ -1.77
HMGB1-202ENST00000339872 LCE1DQ5T752 114 aa4.01□□□□□ -1.77
HMGB1-202ENST00000339872 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
HMGB1-202ENST00000339872 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
HMGB1-202ENST00000339872 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
HMGB1-202ENST00000339872 INE1O15225 51 aa3.84□□□□□ -1.79
HMGB1-202ENST00000339872 KRTAP5-4Q6L8H1 288 aa3.83□□□□□ -1.8
HMGB1-202ENST00000339872 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
HMGB1-202ENST00000339872 KRTAP20-1Q3LI63 56 aa3.78□□□□□ -1.8
HMGB1-202ENST00000339872 KRTAP12-4P60329 112 aa3.76□□□□□ -1.81
HMGB1-202ENST00000339872 LCE4AQ5TA78 99 aa3.74□□□□□ -1.81
HMGB1-202ENST00000339872 MT4P47944 62 aa3.72□□□□□ -1.81
HMGB1-202ENST00000339872 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.82
HMGB1-202ENST00000339872 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
HMGB1-202ENST00000339872 MT3P25713 68 aa3.64□□□□□ -1.83
HMGB1-202ENST00000339872 KRTAP20-2Q3LI61 65 aa3.6□□□□□ -1.83
HMGB1-202ENST00000339872 LCE3DQ9BYE3 92 aa3.58□□□□□ -1.84
HMGB1-202ENST00000339872 HMCN1Q96RW7 5635 aa3.54□□□□□ -1.84
HMGB1-202ENST00000339872 KRTAP5-2Q701N4 177 aa3.49□□□□□ -1.85
HMGB1-202ENST00000339872 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
HMGB1-202ENST00000339872 OBSCNQ5VST9 7968 aa3.37□□□□□ -1.87
HMGB1-202ENST00000339872 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
HMGB1-202ENST00000339872 PRM1P04553 51 aa3.11□□□□□ -1.91
HMGB1-202ENST00000339872 AHNAK2Q8IVF2 5795 aa3.06□□□□□ -1.92
HMGB1-202ENST00000339872 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
HMGB1-202ENST00000339872 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
HMGB1-202ENST00000339872 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
HMGB1-202ENST00000339872 KRTAP5-10Q6L8G5 202 aa2.95□□□□□ -1.94
HMGB1-202ENST00000339872 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
HMGB1-202ENST00000339872 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-202ENST00000339872 LCE1CQ5T751 118 aa2.91□□□□□ -1.94
HMGB1-202ENST00000339872 KRTAP5-7Q6L8G8 165 aa2.87□□□□□ -1.95
HMGB1-202ENST00000339872 GPR98Q8WXG9 6306 aa2.8□□□□□ -1.96
HMGB1-202ENST00000339872 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
HMGB1-202ENST00000339872 KRTAP5-11Q6L8G4 156 aa2.57□□□□□ -2
HMGB1-202ENST00000339872 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
HMGB1-202ENST00000339872 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
HMGB1-202ENST00000339872 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
HMGB1-202ENST00000339872 LCE1FQ5T754 118 aa2.26□□□□□ -2.05
HMGB1-202ENST00000339872 PHGR1C9JFL3 82 aa2.2□□□□□ -2.06
HMGB1-202ENST00000339872 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
HMGB1-202ENST00000339872 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
HMGB1-202ENST00000339872 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 98.6 ms