RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 C10orf95Q9H7T3 257 aa1.75□□□□□ -2.13
MCF2-201ENST00000338585 NDUFAF8A1L188 74 aa1.74□□□□□ -2.13
MCF2-201ENST00000338585 GPR98Q8WXG9 6306 aa1.72□□□□□ -2.13
MCF2-201ENST00000338585 KRTAP10-5P60370 271 aa1.72□□□□□ -2.13
MCF2-201ENST00000338585 MT1XP80297 61 aa1.72□□□□□ -2.13
MCF2-201ENST00000338585 FSIP2Q5CZC0 6907 aa1.72□□□□□ -2.13
MCF2-201ENST00000338585 SSPOA2VEC9 5147 aa1.7□□□□□ -2.14
MCF2-201ENST00000338585 KRTAP25-1Q3LHN0 102 aa1.67□□□□□ -2.14
MCF2-201ENST00000338585 TNP1P09430 55 aa1.67□□□□□ -2.14
MCF2-201ENST00000338585 PRO2289Q9P1D8 64 aa1.67□□□□□ -2.14
MCF2-201ENST00000338585 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
MCF2-201ENST00000338585 KRTAP5-2Q701N4 177 aa1.65□□□□□ -2.15
MCF2-201ENST00000338585 LCE3AQ5TA76 89 aa1.63□□□□□ -2.15
MCF2-201ENST00000338585 CRCT1Q9UGL9 99 aa1.63□□□□□ -2.15
MCF2-201ENST00000338585 FCGBPQ9Y6R7 5405 aaPredicted RBP1.63□□□□□ -2.15
MCF2-201ENST00000338585 KMT2DO14686 5537 aa1.63□□□□□ -2.15
MCF2-201ENST00000338585 KRTAP10-12P60413 245 aa1.62□□□□□ -2.15
MCF2-201ENST00000338585 PP632Q6XCG6 107 aa1.6□□□□□ -2.15
MCF2-201ENST00000338585 KRTAP4-3Q9BYR4 195 aa1.6□□□□□ -2.15
MCF2-201ENST00000338585 KRTAP8-1Q8IUC2 63 aa1.58□□□□□ -2.16
MCF2-201ENST00000338585 KRTAP19-5Q3LI72 72 aa1.56□□□□□ -2.16
MCF2-201ENST00000338585 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
MCF2-201ENST00000338585 KRTAP12-3P60328 96 aa1.55□□□□□ -2.16
MCF2-201ENST00000338585 KRTAP20-1Q3LI63 56 aa1.54□□□□□ -2.16
MCF2-201ENST00000338585 KRTAP19-7Q3SYF9 63 aa1.54□□□□□ -2.16
MCF2-201ENST00000338585 LCE1AQ5T7P2 110 aa1.53□□□□□ -2.17
MCF2-201ENST00000338585 SYNE2Q8WXH0 6885 aaKnown RBP1.52□□□□□ -2.17
MCF2-201ENST00000338585 MT1EP04732 61 aa1.5□□□□□ -2.17
MCF2-201ENST00000338585 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
MCF2-201ENST00000338585 MT3P25713 68 aa1.5□□□□□ -2.17
MCF2-201ENST00000338585 KRTAP2-2Q9BYT5 123 aa1.49□□□□□ -2.17
MCF2-201ENST00000338585 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
MCF2-201ENST00000338585 MT1LQ93083 61 aa1.48□□□□□ -2.17
MCF2-201ENST00000338585 SPRR2FQ96RM1 72 aa1.48□□□□□ -2.17
MCF2-201ENST00000338585 AHNAKQ09666 5890 aaKnown RBP1.47□□□□□ -2.17
MCF2-201ENST00000338585 NEBP20929 6669 aa1.47□□□□□ -2.17
MCF2-201ENST00000338585 LCE3CQ5T5A8 94 aa1.45□□□□□ -2.18
MCF2-201ENST00000338585 MDN1Q9NU22 5596 aa1.44□□□□□ -2.18
MCF2-201ENST00000338585 SPRR5A0A1B0GTR4 108 aa1.44□□□□□ -2.18
MCF2-201ENST00000338585 KRTAP19-3Q7Z4W3 81 aa1.44□□□□□ -2.18
MCF2-201ENST00000338585 KRTAP9-6A8MVA2 160 aa1.42□□□□□ -2.18
MCF2-201ENST00000338585 OBSCNQ5VST9 7968 aa1.42□□□□□ -2.18
MCF2-201ENST00000338585 KRTAP6-3Q3LI67 103 aa1.42□□□□□ -2.18
MCF2-201ENST00000338585 MT1MQ8N339 61 aa1.42□□□□□ -2.18
MCF2-201ENST00000338585 MT1GP13640 62 aa1.41□□□□□ -2.18
MCF2-201ENST00000338585 SPRR2EP22531 72 aa1.4□□□□□ -2.19
MCF2-201ENST00000338585 SPRR2BP35325 72 aa1.4□□□□□ -2.19
MCF2-201ENST00000338585 SPRR2AP35326 72 aa1.4□□□□□ -2.19
MCF2-201ENST00000338585 LCE1FQ5T754 118 aa1.4□□□□□ -2.19
MCF2-201ENST00000338585 KRTAP5-7Q6L8G8 165 aa1.4□□□□□ -2.19
MCF2-201ENST00000338585 DSTQ03001 7570 aaKnown RBP1.39□□□□□ -2.19
MCF2-201ENST00000338585 KRTAP2-3P0C7H8 128 aa1.36□□□□□ -2.19
MCF2-201ENST00000338585 KRTAP2-4Q9BYR9 128 aa1.36□□□□□ -2.19
MCF2-201ENST00000338585 SPRR2DP22532 72 aa1.34□□□□□ -2.19
MCF2-201ENST00000338585 KRTAP5-5Q701N2 237 aaPredicted RBP1.27□□□□□ -2.21
MCF2-201ENST00000338585 KRTAP2-1Q9BYU5 128 aa1.26□□□□□ -2.21
MCF2-201ENST00000338585 INE1O15225 51 aa1.26□□□□□ -2.21
MCF2-201ENST00000338585 KRTAP6-1Q3LI64 71 aa1.25□□□□□ -2.21
MCF2-201ENST00000338585 AHNAK2Q8IVF2 5795 aa1.25□□□□□ -2.21
MCF2-201ENST00000338585 MT1AP04731 61 aa1.24□□□□□ -2.21
MCF2-201ENST00000338585 LCE3EQ5T5B0 92 aa1.23□□□□□ -2.21
MCF2-201ENST00000338585 KRTAP5-10Q6L8G5 202 aa1.23□□□□□ -2.21
MCF2-201ENST00000338585 SYNE1Q8NF91 8797 aaKnown RBP1.22□□□□□ -2.21
MCF2-201ENST00000338585 MT4P47944 62 aa1.18□□□□□ -2.22
MCF2-201ENST00000338585 KRTAP12-4P60329 112 aa1.16□□□□□ -2.22
MCF2-201ENST00000338585 KRTAP6-2Q3LI66 62 aa1.15□□□□□ -2.23
MCF2-201ENST00000338585 KRTAP20-2Q3LI61 65 aa1.14□□□□□ -2.23
MCF2-201ENST00000338585 LCE1CQ5T751 118 aa1.14□□□□□ -2.23
MCF2-201ENST00000338585 LCE1BQ5T7P3 118 aa1.14□□□□□ -2.23
MCF2-201ENST00000338585 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
MCF2-201ENST00000338585 LCE3DQ9BYE3 92 aa1.1□□□□□ -2.23
MCF2-201ENST00000338585 PRM1P04553 51 aa0.93□□□□□ -2.26
MCF2-201ENST00000338585 MUC19Q7Z5P9 8384 aa0.89□□□□□ -2.27
MCF2-201ENST00000338585 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
MCF2-201ENST00000338585 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
MCF2-201ENST00000338585 PHGR1C9JFL3 82 aa0.69□□□□□ -2.3
MCF2-201ENST00000338585 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 236.5 ms