RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HERC2O95714 4834 aa3.02□□□□□ -1.93
CCDC88A-202ENST00000336838 LCE2DQ5TA82 110 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-202ENST00000336838 LCE2AQ5TA79 106 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-202ENST00000336838 HERC1Q15751 4861 aa2.96□□□□□ -1.94
CCDC88A-202ENST00000336838 LCE1AQ5T7P2 110 aa2.95□□□□□ -1.94
CCDC88A-202ENST00000336838 BIRC6Q9NR09 4857 aa2.92□□□□□ -1.94
CCDC88A-202ENST00000336838 LOC100996750A0A140TA64 210 aa2.89□□□□□ -1.95
CCDC88A-202ENST00000336838 LCE5AQ5TCM9 118 aa2.86□□□□□ -1.95
CCDC88A-202ENST00000336838 KRTAP9-6A8MVA2 160 aa2.82□□□□□ -1.96
CCDC88A-202ENST00000336838 KRTAP4-3Q9BYR4 195 aa2.8□□□□□ -1.96
CCDC88A-202ENST00000336838 HMCN2Q8NDA2 5059 aa2.77□□□□□ -1.97
CCDC88A-202ENST00000336838 RNF213Q63HN8 5207 aa2.77□□□□□ -1.97
CCDC88A-202ENST00000336838 KRTAP9-4Q9BYQ2 154 aa2.76□□□□□ -1.97
CCDC88A-202ENST00000336838 EPPK1P58107 5090 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-202ENST00000336838 KRTAP9-2Q9BYQ4 174 aa2.75□□□□□ -1.97
CCDC88A-202ENST00000336838 MT4P47944 62 aa2.74□□□□□ -1.97
CCDC88A-202ENST00000336838 LCE4AQ5TA78 99 aa2.73□□□□□ -1.97
CCDC88A-202ENST00000336838 LCE1DQ5T752 114 aa2.73□□□□□ -1.97
CCDC88A-202ENST00000336838 KRTAP6-2Q3LI66 62 aa2.72□□□□□ -1.97
CCDC88A-202ENST00000336838 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
CCDC88A-202ENST00000336838 KRTAP6-3Q3LI67 103 aa2.69□□□□□ -1.98
CCDC88A-202ENST00000336838 ABCA13Q86UQ4 5058 aa2.68□□□□□ -1.98
CCDC88A-202ENST00000336838 LCE1BQ5T7P3 118 aa2.67□□□□□ -1.98
CCDC88A-202ENST00000336838 KRTAP4-9Q9BYQ8 210 aa2.64□□□□□ -1.99
CCDC88A-202ENST00000336838 FAT4Q6V0I7 4981 aa2.59□□□□□ -2
CCDC88A-202ENST00000336838 UBR4Q5T4S7 5183 aa2.55□□□□□ -2
CCDC88A-202ENST00000336838 KRTAP20-1Q3LI63 56 aa2.53□□□□□ -2
CCDC88A-202ENST00000336838 KRTAP9-6A0A140TA67 174 aa2.53□□□□□ -2
CCDC88A-202ENST00000336838 KRTAP2-2Q9BYT5 123 aa2.53□□□□□ -2.01
CCDC88A-202ENST00000336838 KRTAP9-7A8MTY7 169 aa2.52□□□□□ -2.01
CCDC88A-202ENST00000336838 SYNE2Q8WXH0 6885 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-202ENST00000336838 KRTAP5-9P26371 169 aa2.48□□□□□ -2.01
CCDC88A-202ENST00000336838 MUC2Q02817 5179 aa2.46□□□□□ -2.02
CCDC88A-202ENST00000336838 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.43□□□□□ -2.02
CCDC88A-202ENST00000336838 SYNE1Q8NF91 8797 aaKnown RBP2.4□□□□□ -2.03
CCDC88A-202ENST00000336838 FSIP2Q5CZC0 6907 aa2.23□□□□□ -2.05
CCDC88A-202ENST00000336838 USH2AO75445 5202 aa2.23□□□□□ -2.05
CCDC88A-202ENST00000336838 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
CCDC88A-202ENST00000336838 LCE1CQ5T751 118 aa2.22□□□□□ -2.05
CCDC88A-202ENST00000336838 LCE1EQ5T753 118 aa2.22□□□□□ -2.05
CCDC88A-202ENST00000336838 LCE1FQ5T754 118 aa2.22□□□□□ -2.05
CCDC88A-202ENST00000336838 KRTAP20-2Q3LI61 65 aa2.2□□□□□ -2.06
CCDC88A-202ENST00000336838 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-202ENST00000336838 KMT2DO14686 5537 aa2.18□□□□□ -2.06
CCDC88A-202ENST00000336838 KRTAP5-4Q6L8H1 288 aa2.18□□□□□ -2.06
CCDC88A-202ENST00000336838 NEBP20929 6669 aa2.11□□□□□ -2.07
CCDC88A-202ENST00000336838 SSPOA2VEC9 5147 aa2.1□□□□□ -2.07
CCDC88A-202ENST00000336838 KRTAP4-11Q9BYQ6 195 aa2.1□□□□□ -2.07
CCDC88A-202ENST00000336838 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
CCDC88A-202ENST00000336838 FCGBPQ9Y6R7 5405 aaPredicted RBP2.09□□□□□ -2.08
CCDC88A-202ENST00000336838 KRTAP4-6Q9BYQ5 205 aa2.08□□□□□ -2.08
CCDC88A-202ENST00000336838 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
CCDC88A-202ENST00000336838 MUC12Q9UKN1 5478 aa1.93□□□□□ -2.1
CCDC88A-202ENST00000336838 DSTQ03001 7570 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-202ENST00000336838 KRTAP5-3Q6L8H2 238 aa1.89□□□□□ -2.11
CCDC88A-202ENST00000336838 KRTAP5-2Q701N4 177 aa1.82□□□□□ -2.12
CCDC88A-202ENST00000336838 MACF1Q9UPN3 7388 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-202ENST00000336838 KRTAP5-10Q6L8G5 202 aa1.79□□□□□ -2.12
CCDC88A-202ENST00000336838 MUC5ACP98088 5654 aa1.77□□□□□ -2.13
CCDC88A-202ENST00000336838 KRTAP4-4Q9BYR3 166 aa1.75□□□□□ -2.13
CCDC88A-202ENST00000336838 KRTAP4-12Q9BQ66 201 aa1.66□□□□□ -2.14
CCDC88A-202ENST00000336838 KRTAP4-2Q9BYR5 136 aa1.66□□□□□ -2.14
CCDC88A-202ENST00000336838 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
CCDC88A-202ENST00000336838 MUC5BQ9HC84 5762 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-202ENST00000336838 KRTAP5-11Q6L8G4 156 aa1.64□□□□□ -2.15
CCDC88A-202ENST00000336838 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
CCDC88A-202ENST00000336838 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-202ENST00000336838 KRTAP5-8O75690 187 aa1.59□□□□□ -2.15
CCDC88A-202ENST00000336838 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
CCDC88A-202ENST00000336838 KRTAP5-1Q6L8H4 278 aa1.55□□□□□ -2.16
CCDC88A-202ENST00000336838 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
CCDC88A-202ENST00000336838 MUC19Q7Z5P9 8384 aa1.5□□□□□ -2.17
CCDC88A-202ENST00000336838 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
CCDC88A-202ENST00000336838 AHNAKQ09666 5890 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-202ENST00000336838 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
CCDC88A-202ENST00000336838 PHGR1C9JFL3 82 aa1.35□□□□□ -2.19
CCDC88A-202ENST00000336838 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 132 ms