RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SSPOA2VEC9 5147 aa2.43□□□□□ -2.02
SF3B1-201ENST00000335508 FCGBPQ9Y6R7 5405 aaPredicted RBP2.42□□□□□ -2.02
SF3B1-201ENST00000335508 KRTAP4-8A0A0G2JLE6 195 aa2.41□□□□□ -2.02
SF3B1-201ENST00000335508 KRTAP4-8Q9BYQ9 185 aa2.41□□□□□ -2.02
SF3B1-201ENST00000335508 SPRR2EP22531 72 aa2.41□□□□□ -2.02
SF3B1-201ENST00000335508 SPRR2BP35325 72 aa2.41□□□□□ -2.02
SF3B1-201ENST00000335508 SPRR2AP35326 72 aa2.41□□□□□ -2.02
SF3B1-201ENST00000335508 KRTAP19-3Q7Z4W3 81 aa2.4□□□□□ -2.02
SF3B1-201ENST00000335508 MT1EP04732 61 aa2.38□□□□□ -2.03
SF3B1-201ENST00000335508 MT1LQ93083 61 aa2.37□□□□□ -2.03
SF3B1-201ENST00000335508 LPAP08519 4548 aa2.36□□□□□ -2.03
SF3B1-201ENST00000335508 KRTAP19-7Q3SYF9 63 aa2.33□□□□□ -2.04
SF3B1-201ENST00000335508 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
SF3B1-201ENST00000335508 KRTAP9-6A0A140TA67 174 aa2.33□□□□□ -2.04
SF3B1-201ENST00000335508 SPRR2DP22532 72 aa2.32□□□□□ -2.04
SF3B1-201ENST00000335508 KRTAP12-4P60329 112 aa2.32□□□□□ -2.04
SF3B1-201ENST00000335508 MT1MQ8N339 61 aa2.28□□□□□ -2.04
SF3B1-201ENST00000335508 KRTAP6-3Q3LI67 103 aa2.26□□□□□ -2.05
SF3B1-201ENST00000335508 LCE3EQ5T5B0 92 aa2.25□□□□□ -2.05
SF3B1-201ENST00000335508 MUC12Q9UKN1 5478 aa2.23□□□□□ -2.05
SF3B1-201ENST00000335508 LCE3BQ5TA77 95 aa2.22□□□□□ -2.05
SF3B1-201ENST00000335508 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
SF3B1-201ENST00000335508 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
SF3B1-201ENST00000335508 KRTAP9-7A8MTY7 169 aa2.2□□□□□ -2.06
SF3B1-201ENST00000335508 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.18□□□□□ -2.06
SF3B1-201ENST00000335508 NEBP20929 6669 aa2.17□□□□□ -2.06
SF3B1-201ENST00000335508 LCE5AQ5TCM9 118 aa2.17□□□□□ -2.06
SF3B1-201ENST00000335508 KRTAP4-7Q9BYR0 210 aa2.15□□□□□ -2.06
SF3B1-201ENST00000335508 MT3P25713 68 aa2.14□□□□□ -2.07
SF3B1-201ENST00000335508 MT1AP04731 61 aa2.14□□□□□ -2.07
SF3B1-201ENST00000335508 MT4P47944 62 aa2.13□□□□□ -2.07
SF3B1-201ENST00000335508 KRTAP5-9P26371 169 aa2.12□□□□□ -2.07
SF3B1-201ENST00000335508 KRTAP2-3P0C7H8 128 aa2.08□□□□□ -2.08
SF3B1-201ENST00000335508 KRTAP2-4Q9BYR9 128 aa2.08□□□□□ -2.08
SF3B1-201ENST00000335508 LCE1FQ5T754 118 aa2.07□□□□□ -2.08
SF3B1-201ENST00000335508 AHNAK2Q8IVF2 5795 aa2.06□□□□□ -2.08
SF3B1-201ENST00000335508 LCE1EQ5T753 118 aa2.05□□□□□ -2.08
SF3B1-201ENST00000335508 KRTAP2-2Q9BYT5 123 aa2.05□□□□□ -2.08
SF3B1-201ENST00000335508 KRTAP2-1Q9BYU5 128 aa2.05□□□□□ -2.08
SF3B1-201ENST00000335508 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
SF3B1-201ENST00000335508 PRM1P04553 51 aa2.03□□□□□ -2.08
SF3B1-201ENST00000335508 KRTAP20-1Q3LI63 56 aa2.03□□□□□ -2.09
SF3B1-201ENST00000335508 LCE4AQ5TA78 99 aa2.02□□□□□ -2.09
SF3B1-201ENST00000335508 KRTAP9-6A8MVA2 160 aa2□□□□□ -2.09
SF3B1-201ENST00000335508 LCE1BQ5T7P3 118 aa2□□□□□ -2.09
SF3B1-201ENST00000335508 LCE1DQ5T752 114 aa1.97□□□□□ -2.09
SF3B1-201ENST00000335508 LOC100996750A0A140TA64 210 aa1.96□□□□□ -2.1
SF3B1-201ENST00000335508 HMCN1Q96RW7 5635 aa1.94□□□□□ -2.1
SF3B1-201ENST00000335508 KRTAP6-1Q3LI64 71 aa1.91□□□□□ -2.1
SF3B1-201ENST00000335508 KRTAP9-4Q9BYQ2 154 aa1.9□□□□□ -2.11
SF3B1-201ENST00000335508 KRTAP4-9Q9BYQ8 210 aa1.85□□□□□ -2.11
SF3B1-201ENST00000335508 KRTAP6-2Q3LI66 62 aa1.84□□□□□ -2.11
SF3B1-201ENST00000335508 LCE1CQ5T751 118 aa1.8□□□□□ -2.12
SF3B1-201ENST00000335508 MUC5ACP98088 5654 aa1.79□□□□□ -2.12
SF3B1-201ENST00000335508 KRTAP20-2Q3LI61 65 aa1.74□□□□□ -2.13
SF3B1-201ENST00000335508 KRTAP5-4Q6L8H1 288 aa1.71□□□□□ -2.14
SF3B1-201ENST00000335508 KRTAP9-9Q9BYP9 154 aa1.7□□□□□ -2.14
SF3B1-201ENST00000335508 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
SF3B1-201ENST00000335508 KRTAP5-5Q701N2 237 aaPredicted RBP1.69□□□□□ -2.14
SF3B1-201ENST00000335508 KRTAP4-6Q9BYQ5 205 aa1.68□□□□□ -2.14
SF3B1-201ENST00000335508 KRTAP4-11Q9BYQ6 195 aa1.6□□□□□ -2.15
SF3B1-201ENST00000335508 KRTAP5-3Q6L8H2 238 aa1.56□□□□□ -2.16
SF3B1-201ENST00000335508 KRTAP5-2Q701N4 177 aa1.5□□□□□ -2.17
SF3B1-201ENST00000335508 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
SF3B1-201ENST00000335508 KRTAP5-10Q6L8G5 202 aa1.44□□□□□ -2.18
SF3B1-201ENST00000335508 KRTAP4-12Q9BQ66 201 aa1.43□□□□□ -2.18
SF3B1-201ENST00000335508 KRTAP4-2Q9BYR5 136 aa1.43□□□□□ -2.18
SF3B1-201ENST00000335508 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
SF3B1-201ENST00000335508 KRTAP4-4Q9BYR3 166 aa1.4□□□□□ -2.19
SF3B1-201ENST00000335508 KRTAP5-8O75690 187 aa1.38□□□□□ -2.19
SF3B1-201ENST00000335508 KRTAP5-11Q6L8G4 156 aa1.28□□□□□ -2.2
SF3B1-201ENST00000335508 KRTAP5-1Q6L8H4 278 aa1.28□□□□□ -2.2
SF3B1-201ENST00000335508 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.24□□□□□ -2.21
SF3B1-201ENST00000335508 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
SF3B1-201ENST00000335508 PHGR1C9JFL3 82 aa1.12□□□□□ -2.23
SF3B1-201ENST00000335508 KRTAP21-1Q3LI58 79 aa0.97□□□□□ -2.25
SF3B1-201ENST00000335508 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 20.7 ms