RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 LCE2DQ5TA82 110 aaPredicted RBP4.7□□□□□ -1.66
ATP2C1-201ENST00000328560 KRTAP2-3P0C7H8 128 aa4.69□□□□□ -1.66
ATP2C1-201ENST00000328560 KRTAP2-4Q9BYR9 128 aa4.69□□□□□ -1.66
ATP2C1-201ENST00000328560 KRTAP2-1Q9BYU5 128 aa4.69□□□□□ -1.66
ATP2C1-201ENST00000328560 LOC100996750A0A140TA64 210 aa4.68□□□□□ -1.66
ATP2C1-201ENST00000328560 CRCT1Q9UGL9 99 aa4.68□□□□□ -1.66
ATP2C1-201ENST00000328560 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
ATP2C1-201ENST00000328560 FCGBPQ9Y6R7 5405 aaPredicted RBP4.68□□□□□ -1.66
ATP2C1-201ENST00000328560 MT1GP13640 62 aa4.63□□□□□ -1.67
ATP2C1-201ENST00000328560 DSTQ03001 7570 aaKnown RBP4.59□□□□□ -1.67
ATP2C1-201ENST00000328560 SPRR2FQ96RM1 72 aa4.59□□□□□ -1.68
ATP2C1-201ENST00000328560 KRTAP19-3Q7Z4W3 81 aa4.57□□□□□ -1.68
ATP2C1-201ENST00000328560 MT1MQ8N339 61 aa4.54□□□□□ -1.68
ATP2C1-201ENST00000328560 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
ATP2C1-201ENST00000328560 MACF1Q9UPN3 7388 aaKnown RBP4.37□□□□□ -1.71
ATP2C1-201ENST00000328560 LCE5AQ5TCM9 118 aa4.36□□□□□ -1.71
ATP2C1-201ENST00000328560 SYNE1Q8NF91 8797 aaKnown RBP4.34□□□□□ -1.72
ATP2C1-201ENST00000328560 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.32□□□□□ -1.72
ATP2C1-201ENST00000328560 LCE3BQ5TA77 95 aa4.31□□□□□ -1.72
ATP2C1-201ENST00000328560 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
ATP2C1-201ENST00000328560 KRTAP12-4P60329 112 aa4.3□□□□□ -1.72
ATP2C1-201ENST00000328560 SYNE2Q8WXH0 6885 aaKnown RBP4.27□□□□□ -1.73
ATP2C1-201ENST00000328560 KRTAP4-9Q9BYQ8 210 aa4.24□□□□□ -1.73
ATP2C1-201ENST00000328560 MDN1Q9NU22 5596 aa4.21□□□□□ -1.74
ATP2C1-201ENST00000328560 SPRR2EP22531 72 aa4.2□□□□□ -1.74
ATP2C1-201ENST00000328560 SPRR2BP35325 72 aa4.2□□□□□ -1.74
ATP2C1-201ENST00000328560 SPRR2AP35326 72 aa4.2□□□□□ -1.74
ATP2C1-201ENST00000328560 KRTAP6-1Q3LI64 71 aa4.15□□□□□ -1.74
ATP2C1-201ENST00000328560 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
ATP2C1-201ENST00000328560 KRTAP5-9P26371 169 aa4.09□□□□□ -1.75
ATP2C1-201ENST00000328560 MT1AP04731 61 aa4.05□□□□□ -1.76
ATP2C1-201ENST00000328560 SPRR2DP22532 72 aa4.02□□□□□ -1.77
ATP2C1-201ENST00000328560 KRTAP6-3Q3LI67 103 aa4.01□□□□□ -1.77
ATP2C1-201ENST00000328560 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
ATP2C1-201ENST00000328560 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
ATP2C1-201ENST00000328560 KRTAP5-5Q701N2 237 aaPredicted RBP3.91□□□□□ -1.78
ATP2C1-201ENST00000328560 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
ATP2C1-201ENST00000328560 NEBP20929 6669 aa3.85□□□□□ -1.79
ATP2C1-201ENST00000328560 KRTAP9-4Q9BYQ2 154 aa3.81□□□□□ -1.8
ATP2C1-201ENST00000328560 PRM1P04553 51 aa3.8□□□□□ -1.8
ATP2C1-201ENST00000328560 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
ATP2C1-201ENST00000328560 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
ATP2C1-201ENST00000328560 KRTAP6-2Q3LI66 62 aa3.75□□□□□ -1.81
ATP2C1-201ENST00000328560 MT3P25713 68 aa3.74□□□□□ -1.81
ATP2C1-201ENST00000328560 LCE1DQ5T752 114 aa3.6□□□□□ -1.83
ATP2C1-201ENST00000328560 MT4P47944 62 aa3.57□□□□□ -1.84
ATP2C1-201ENST00000328560 KRTAP5-4Q6L8H1 288 aa3.48□□□□□ -1.85
ATP2C1-201ENST00000328560 KRTAP4-6Q9BYQ5 205 aa3.47□□□□□ -1.85
ATP2C1-201ENST00000328560 LCE4AQ5TA78 99 aa3.43□□□□□ -1.86
ATP2C1-201ENST00000328560 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
ATP2C1-201ENST00000328560 KRTAP20-2Q3LI61 65 aa3.36□□□□□ -1.87
ATP2C1-201ENST00000328560 HMCN1Q96RW7 5635 aa3.22□□□□□ -1.89
ATP2C1-201ENST00000328560 KRTAP5-2Q701N4 177 aa3.21□□□□□ -1.9
ATP2C1-201ENST00000328560 GPR98Q8WXG9 6306 aa3.18□□□□□ -1.9
ATP2C1-201ENST00000328560 MUC19Q7Z5P9 8384 aa3.17□□□□□ -1.9
ATP2C1-201ENST00000328560 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
ATP2C1-201ENST00000328560 KRTAP5-3Q6L8H2 238 aa3.12□□□□□ -1.91
ATP2C1-201ENST00000328560 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
ATP2C1-201ENST00000328560 AHNAK2Q8IVF2 5795 aa2.96□□□□□ -1.94
ATP2C1-201ENST00000328560 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
ATP2C1-201ENST00000328560 KRTAP4-11Q9BYQ6 195 aa2.91□□□□□ -1.94
ATP2C1-201ENST00000328560 KRTAP5-7Q6L8G8 165 aa2.81□□□□□ -1.96
ATP2C1-201ENST00000328560 KRTAP4-2Q9BYR5 136 aa2.81□□□□□ -1.96
ATP2C1-201ENST00000328560 LCE1CQ5T751 118 aa2.8□□□□□ -1.96
ATP2C1-201ENST00000328560 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
ATP2C1-201ENST00000328560 KRTAP5-8O75690 187 aa2.64□□□□□ -1.99
ATP2C1-201ENST00000328560 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
ATP2C1-201ENST00000328560 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
ATP2C1-201ENST00000328560 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
ATP2C1-201ENST00000328560 KRTAP9-9Q9BYP9 154 aa2.48□□□□□ -2.01
ATP2C1-201ENST00000328560 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
ATP2C1-201ENST00000328560 AHNAKQ09666 5890 aaKnown RBP2.44□□□□□ -2.02
ATP2C1-201ENST00000328560 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
ATP2C1-201ENST00000328560 KRTAP5-11Q6L8G4 156 aa2.41□□□□□ -2.02
ATP2C1-201ENST00000328560 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
ATP2C1-201ENST00000328560 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
ATP2C1-201ENST00000328560 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 13 ms