RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 MT1EP04732 61 aa5.59□□□□□ -1.51
USH1C-202ENST00000318024 KRTAP2-3P0C7H8 128 aa5.56□□□□□ -1.52
USH1C-202ENST00000318024 KRTAP2-4Q9BYR9 128 aa5.56□□□□□ -1.52
USH1C-202ENST00000318024 KRTAP2-1Q9BYU5 128 aa5.56□□□□□ -1.52
USH1C-202ENST00000318024 KRTAP9-6A0A140TA67 174 aa5.52□□□□□ -1.53
USH1C-202ENST00000318024 SPRR2FQ96RM1 72 aa5.52□□□□□ -1.53
USH1C-202ENST00000318024 MT1LQ93083 61 aa5.49□□□□□ -1.53
USH1C-202ENST00000318024 KRTAP4-7Q9BYR0 210 aa5.46□□□□□ -1.54
USH1C-202ENST00000318024 MDN1Q9NU22 5596 aa5.45□□□□□ -1.54
USH1C-202ENST00000318024 KRTAP19-4Q3LI73 84 aa5.4□□□□□ -1.55
USH1C-202ENST00000318024 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.39□□□□□ -1.55
USH1C-202ENST00000318024 KRTAP19-3Q7Z4W3 81 aa5.36□□□□□ -1.55
USH1C-202ENST00000318024 KRTAP5-9P26371 169 aa5.33□□□□□ -1.56
USH1C-202ENST00000318024 MT1GP13640 62 aa5.29□□□□□ -1.56
USH1C-202ENST00000318024 DSTQ03001 7570 aaKnown RBP5.29□□□□□ -1.56
USH1C-202ENST00000318024 KRTAP4-3Q9BYR4 195 aa5.29□□□□□ -1.56
USH1C-202ENST00000318024 MT1MQ8N339 61 aa5.27□□□□□ -1.57
USH1C-202ENST00000318024 LCE5AQ5TCM9 118 aa5.26□□□□□ -1.57
USH1C-202ENST00000318024 LCE1AQ5T7P2 110 aa5.23□□□□□ -1.57
USH1C-202ENST00000318024 KRTAP6-3Q3LI67 103 aa5.22□□□□□ -1.57
USH1C-202ENST00000318024 SPRR2EP22531 72 aa5.2□□□□□ -1.58
USH1C-202ENST00000318024 SPRR2BP35325 72 aa5.2□□□□□ -1.58
USH1C-202ENST00000318024 SPRR2AP35326 72 aa5.2□□□□□ -1.58
USH1C-202ENST00000318024 LOC100996750A0A140TA64 210 aa5.12□□□□□ -1.59
USH1C-202ENST00000318024 KRTAP9-7A8MTY7 169 aa5.08□□□□□ -1.6
USH1C-202ENST00000318024 SPRR2DP22532 72 aa5□□□□□ -1.61
USH1C-202ENST00000318024 NEBP20929 6669 aa4.97□□□□□ -1.61
USH1C-202ENST00000318024 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
USH1C-202ENST00000318024 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
USH1C-202ENST00000318024 KRTAP5-5Q701N2 237 aaPredicted RBP4.72□□□□□ -1.65
USH1C-202ENST00000318024 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
USH1C-202ENST00000318024 SYNE1Q8NF91 8797 aaKnown RBP4.66□□□□□ -1.66
USH1C-202ENST00000318024 MT1AP04731 61 aa4.64□□□□□ -1.67
USH1C-202ENST00000318024 KRTAP4-9Q9BYQ8 210 aa4.62□□□□□ -1.67
USH1C-202ENST00000318024 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
USH1C-202ENST00000318024 KRTAP20-1Q3LI63 56 aa4.48□□□□□ -1.69
USH1C-202ENST00000318024 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.7
USH1C-202ENST00000318024 KRTAP5-4Q6L8H1 288 aa4.45□□□□□ -1.7
USH1C-202ENST00000318024 LCE3EQ5T5B0 92 aa4.44□□□□□ -1.7
USH1C-202ENST00000318024 MT4P47944 62 aa4.41□□□□□ -1.7
USH1C-202ENST00000318024 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
USH1C-202ENST00000318024 KRTAP4-6Q9BYQ5 205 aa4.38□□□□□ -1.71
USH1C-202ENST00000318024 PRM1P04553 51 aa4.36□□□□□ -1.71
USH1C-202ENST00000318024 LCE4AQ5TA78 99 aa4.34□□□□□ -1.72
USH1C-202ENST00000318024 HMCN1Q96RW7 5635 aa4.32□□□□□ -1.72
USH1C-202ENST00000318024 KRTAP6-2Q3LI66 62 aa4.3□□□□□ -1.72
USH1C-202ENST00000318024 LCE1DQ5T752 114 aa4.27□□□□□ -1.73
USH1C-202ENST00000318024 OBSCNQ5VST9 7968 aa4.25□□□□□ -1.73
USH1C-202ENST00000318024 KRTAP20-2Q3LI61 65 aa4.21□□□□□ -1.74
USH1C-202ENST00000318024 MT3P25713 68 aa4.19□□□□□ -1.74
USH1C-202ENST00000318024 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
USH1C-202ENST00000318024 KRTAP5-2Q701N4 177 aa4.05□□□□□ -1.76
USH1C-202ENST00000318024 KRTAP5-3Q6L8H2 238 aa4.04□□□□□ -1.76
USH1C-202ENST00000318024 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
USH1C-202ENST00000318024 KRTAP4-11Q9BYQ6 195 aa3.65□□□□□ -1.83
USH1C-202ENST00000318024 LCE1FQ5T754 118 aa3.64□□□□□ -1.83
USH1C-202ENST00000318024 KRTAP5-1Q6L8H4 278 aa3.54□□□□□ -1.84
USH1C-202ENST00000318024 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
USH1C-202ENST00000318024 KRTAP5-8O75690 187 aa3.51□□□□□ -1.85
USH1C-202ENST00000318024 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
USH1C-202ENST00000318024 KRTAP5-10Q6L8G5 202 aa3.47□□□□□ -1.85
USH1C-202ENST00000318024 KRTAP4-2Q9BYR5 136 aa3.4□□□□□ -1.86
USH1C-202ENST00000318024 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
USH1C-202ENST00000318024 GPR98Q8WXG9 6306 aa3.33□□□□□ -1.88
USH1C-202ENST00000318024 KRTAP5-7Q6L8G8 165 aa3.31□□□□□ -1.88
USH1C-202ENST00000318024 MUC5BQ9HC84 5762 aaPredicted RBP3.2□□□□□ -1.9
USH1C-202ENST00000318024 KRTAP9-9Q9BYP9 154 aa3.14□□□□□ -1.91
USH1C-202ENST00000318024 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.11□□□□□ -1.91
USH1C-202ENST00000318024 KRTAP21-2Q3LI59 83 aa3.03□□□□□ -1.92
USH1C-202ENST00000318024 KRTAP5-11Q6L8G4 156 aa2.95□□□□□ -1.94
USH1C-202ENST00000318024 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
USH1C-202ENST00000318024 KRTAP21-1Q3LI58 79 aa2.84□□□□□ -1.96
USH1C-202ENST00000318024 KRTAP4-4Q9BYR3 166 aa2.81□□□□□ -1.96
USH1C-202ENST00000318024 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
USH1C-202ENST00000318024 PHGR1C9JFL3 82 aa2.56□□□□□ -2
USH1C-202ENST00000318024 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
USH1C-202ENST00000318024 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 5.7 ms