RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 MUC12Q9UKN1 5478 aa4.86□□□□□ -1.63
CPNE1-201ENST00000317677 KRTAP19-5Q3LI72 72 aa4.84□□□□□ -1.63
CPNE1-201ENST00000317677 KRTAP5-9P26371 169 aa4.82□□□□□ -1.64
CPNE1-201ENST00000317677 KRTAP19-7Q3SYF9 63 aa4.77□□□□□ -1.65
CPNE1-201ENST00000317677 MDN1Q9NU22 5596 aa4.74□□□□□ -1.65
CPNE1-201ENST00000317677 KRTAP20-1Q3LI63 56 aa4.71□□□□□ -1.66
CPNE1-201ENST00000317677 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
CPNE1-201ENST00000317677 MT1EP04732 61 aa4.65□□□□□ -1.67
CPNE1-201ENST00000317677 SPRR2EP22531 72 aa4.64□□□□□ -1.67
CPNE1-201ENST00000317677 SPRR2BP35325 72 aa4.64□□□□□ -1.67
CPNE1-201ENST00000317677 SPRR2AP35326 72 aa4.64□□□□□ -1.67
CPNE1-201ENST00000317677 KRTAP2-3P0C7H8 128 aa4.61□□□□□ -1.67
CPNE1-201ENST00000317677 LCE3CQ5T5A8 94 aa4.61□□□□□ -1.67
CPNE1-201ENST00000317677 KRTAP2-4Q9BYR9 128 aa4.61□□□□□ -1.67
CPNE1-201ENST00000317677 KRTAP2-1Q9BYU5 128 aa4.61□□□□□ -1.67
CPNE1-201ENST00000317677 MT1LQ93083 61 aa4.58□□□□□ -1.68
CPNE1-201ENST00000317677 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
CPNE1-201ENST00000317677 KRTAP4-7Q9BYR0 210 aa4.53□□□□□ -1.68
CPNE1-201ENST00000317677 SPRR2DP22532 72 aa4.49□□□□□ -1.69
CPNE1-201ENST00000317677 KRTAP9-6A8MVA2 160 aa4.44□□□□□ -1.7
CPNE1-201ENST00000317677 KRTAP2-2Q9BYT5 123 aa4.44□□□□□ -1.7
CPNE1-201ENST00000317677 KRTAP19-4Q3LI73 84 aa4.42□□□□□ -1.7
CPNE1-201ENST00000317677 KRTAP19-3Q7Z4W3 81 aa4.42□□□□□ -1.7
CPNE1-201ENST00000317677 MT1MQ8N339 61 aa4.37□□□□□ -1.71
CPNE1-201ENST00000317677 KRTAP4-3Q9BYR4 195 aa4.37□□□□□ -1.71
CPNE1-201ENST00000317677 MT1GP13640 62 aa4.36□□□□□ -1.71
CPNE1-201ENST00000317677 LCE3BQ5TA77 95 aa4.36□□□□□ -1.71
CPNE1-201ENST00000317677 LOC100996750A0A140TA64 210 aa4.34□□□□□ -1.71
CPNE1-201ENST00000317677 KRTAP4-6Q9BYQ5 205 aa4.34□□□□□ -1.71
CPNE1-201ENST00000317677 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.71
CPNE1-201ENST00000317677 DSTQ03001 7570 aaKnown RBP4.19□□□□□ -1.74
CPNE1-201ENST00000317677 KRTAP12-4P60329 112 aa4.13□□□□□ -1.75
CPNE1-201ENST00000317677 GPR98Q8WXG9 6306 aa4.03□□□□□ -1.76
CPNE1-201ENST00000317677 KRTAP4-9Q9BYQ8 210 aa4.02□□□□□ -1.77
CPNE1-201ENST00000317677 LCE4AQ5TA78 99 aa3.98□□□□□ -1.77
CPNE1-201ENST00000317677 KRTAP5-5Q701N2 237 aaPredicted RBP3.94□□□□□ -1.78
CPNE1-201ENST00000317677 LCE1DQ5T752 114 aa3.94□□□□□ -1.78
CPNE1-201ENST00000317677 MT4P47944 62 aa3.91□□□□□ -1.78
CPNE1-201ENST00000317677 HMCN1Q96RW7 5635 aa3.9□□□□□ -1.79
CPNE1-201ENST00000317677 KRTAP6-1Q3LI64 71 aa3.88□□□□□ -1.79
CPNE1-201ENST00000317677 MT1AP04731 61 aa3.86□□□□□ -1.79
CPNE1-201ENST00000317677 KRTAP5-4Q6L8H1 288 aa3.86□□□□□ -1.79
CPNE1-201ENST00000317677 AHNAK2Q8IVF2 5795 aa3.8□□□□□ -1.8
CPNE1-201ENST00000317677 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
CPNE1-201ENST00000317677 PRM1P04553 51 aa3.69□□□□□ -1.82
CPNE1-201ENST00000317677 KRTAP9-4Q9BYQ2 154 aa3.66□□□□□ -1.82
CPNE1-201ENST00000317677 KRTAP20-2Q3LI61 65 aa3.65□□□□□ -1.82
CPNE1-201ENST00000317677 LCE3EQ5T5B0 92 aa3.65□□□□□ -1.82
CPNE1-201ENST00000317677 KRTAP5-10Q6L8G5 202 aa3.65□□□□□ -1.83
CPNE1-201ENST00000317677 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
CPNE1-201ENST00000317677 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
CPNE1-201ENST00000317677 KRTAP9-9Q9BYP9 154 aa3.57□□□□□ -1.84
CPNE1-201ENST00000317677 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
CPNE1-201ENST00000317677 KRTAP5-7Q6L8G8 165 aa3.52□□□□□ -1.85
CPNE1-201ENST00000317677 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
CPNE1-201ENST00000317677 MT3P25713 68 aa3.45□□□□□ -1.86
CPNE1-201ENST00000317677 KRTAP5-2Q701N4 177 aa3.38□□□□□ -1.87
CPNE1-201ENST00000317677 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
CPNE1-201ENST00000317677 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.88
CPNE1-201ENST00000317677 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
CPNE1-201ENST00000317677 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
CPNE1-201ENST00000317677 KRTAP5-8O75690 187 aa3.21□□□□□ -1.9
CPNE1-201ENST00000317677 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
CPNE1-201ENST00000317677 MUC5BQ9HC84 5762 aaPredicted RBP3.13□□□□□ -1.91
CPNE1-201ENST00000317677 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
CPNE1-201ENST00000317677 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
CPNE1-201ENST00000317677 LCE1BQ5T7P3 118 aa2.83□□□□□ -1.96
CPNE1-201ENST00000317677 LCE1CQ5T751 118 aa2.78□□□□□ -1.97
CPNE1-201ENST00000317677 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
CPNE1-201ENST00000317677 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.62□□□□□ -1.99
CPNE1-201ENST00000317677 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
CPNE1-201ENST00000317677 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
CPNE1-201ENST00000317677 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
CPNE1-201ENST00000317677 KRTAP4-4Q9BYR3 166 aa2.29□□□□□ -2.04
CPNE1-201ENST00000317677 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
CPNE1-201ENST00000317677 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.09
CPNE1-201ENST00000317677 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 75.9 ms