RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 HERC2O95714 4834 aa2.39□□□□□ -2.03
LIMCH1-201ENST00000313860 KRTAP4-7Q9BYR0 210 aa2.37□□□□□ -2.03
LIMCH1-201ENST00000313860 KRTAP19-1Q8IUB9 90 aa2.37□□□□□ -2.03
LIMCH1-201ENST00000313860 KRTAP4-8A0A0G2JLE6 195 aa2.36□□□□□ -2.03
LIMCH1-201ENST00000313860 KRTAP4-8Q9BYQ9 185 aa2.36□□□□□ -2.03
LIMCH1-201ENST00000313860 HMCN2Q8NDA2 5059 aa2.3□□□□□ -2.04
LIMCH1-201ENST00000313860 MT1XP80297 61 aa2.28□□□□□ -2.04
LIMCH1-201ENST00000313860 KRTAP2-3P0C7H8 128 aa2.27□□□□□ -2.05
LIMCH1-201ENST00000313860 KRTAP2-4Q9BYR9 128 aa2.27□□□□□ -2.05
LIMCH1-201ENST00000313860 KRTAP2-1Q9BYU5 128 aa2.27□□□□□ -2.05
LIMCH1-201ENST00000313860 LOC100996750A0A140TA64 210 aa2.27□□□□□ -2.05
LIMCH1-201ENST00000313860 BIRC6Q9NR09 4857 aa2.25□□□□□ -2.05
LIMCH1-201ENST00000313860 KRTAP4-9Q9BYQ8 210 aa2.24□□□□□ -2.05
LIMCH1-201ENST00000313860 SYNE1Q8NF91 8797 aaKnown RBP2.22□□□□□ -2.05
LIMCH1-201ENST00000313860 KRTAP9-6A8MVA2 160 aa2.21□□□□□ -2.06
LIMCH1-201ENST00000313860 USH2AO75445 5202 aa2.21□□□□□ -2.06
LIMCH1-201ENST00000313860 MT1BP07438 61 aa2.18□□□□□ -2.06
LIMCH1-201ENST00000313860 KRTAP4-3Q9BYR4 195 aa2.17□□□□□ -2.06
LIMCH1-201ENST00000313860 KRTAP6-2Q3LI66 62 aa2.16□□□□□ -2.06
LIMCH1-201ENST00000313860 FSIP2Q5CZC0 6907 aa2.15□□□□□ -2.06
LIMCH1-201ENST00000313860 KRTAP9-8Q9BYQ0 159 aa2.12□□□□□ -2.07
LIMCH1-201ENST00000313860 KRTAP19-3Q7Z4W3 81 aa2.11□□□□□ -2.07
LIMCH1-201ENST00000313860 MT1LQ93083 61 aa2.1□□□□□ -2.07
LIMCH1-201ENST00000313860 KRTAP19-7Q3SYF9 63 aa2.09□□□□□ -2.07
LIMCH1-201ENST00000313860 KRTAP2-2Q9BYT5 123 aa2.08□□□□□ -2.08
LIMCH1-201ENST00000313860 KRTAP9-7A8MTY7 169 aa2.06□□□□□ -2.08
LIMCH1-201ENST00000313860 OBSCNQ5VST9 7968 aa2.05□□□□□ -2.08
LIMCH1-201ENST00000313860 KRTAP20-2Q3LI61 65 aa2.03□□□□□ -2.08
LIMCH1-201ENST00000313860 KRTAP4-6Q9BYQ5 205 aa2.03□□□□□ -2.08
LIMCH1-201ENST00000313860 MT1EP04732 61 aa2.03□□□□□ -2.08
LIMCH1-201ENST00000313860 KRTAP9-3Q9BYQ3 159 aa2.01□□□□□ -2.09
LIMCH1-201ENST00000313860 KRTAP4-11Q9BYQ6 195 aa2□□□□□ -2.09
LIMCH1-201ENST00000313860 MT1MQ8N339 61 aa2□□□□□ -2.09
LIMCH1-201ENST00000313860 SSPOA2VEC9 5147 aa1.97□□□□□ -2.09
LIMCH1-201ENST00000313860 KMT2DO14686 5537 aa1.97□□□□□ -2.09
LIMCH1-201ENST00000313860 SYNE2Q8WXH0 6885 aaKnown RBP1.95□□□□□ -2.1
LIMCH1-201ENST00000313860 KRTAP9-6A0A140TA67 174 aa1.93□□□□□ -2.1
LIMCH1-201ENST00000313860 KRTAP9-2Q9BYQ4 174 aa1.91□□□□□ -2.1
LIMCH1-201ENST00000313860 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
LIMCH1-201ENST00000313860 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.89□□□□□ -2.11
LIMCH1-201ENST00000313860 MT1AP04731 61 aa1.89□□□□□ -2.11
LIMCH1-201ENST00000313860 KRTAP19-6Q3LI70 58 aa1.89□□□□□ -2.11
LIMCH1-201ENST00000313860 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
LIMCH1-201ENST00000313860 KRTAP4-12Q9BQ66 201 aa1.88□□□□□ -2.11
LIMCH1-201ENST00000313860 DSTQ03001 7570 aaKnown RBP1.86□□□□□ -2.11
LIMCH1-201ENST00000313860 KRTAP6-1Q3LI64 71 aa1.84□□□□□ -2.11
LIMCH1-201ENST00000313860 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP9-9Q9BYP9 154 aa1.82□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP9-4Q9BYQ2 154 aa1.82□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP5-5Q701N2 237 aaPredicted RBP1.82□□□□□ -2.12
LIMCH1-201ENST00000313860 FCGBPQ9Y6R7 5405 aaPredicted RBP1.81□□□□□ -2.12
LIMCH1-201ENST00000313860 MDN1Q9NU22 5596 aa1.81□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP20-1Q3LI63 56 aa1.78□□□□□ -2.12
LIMCH1-201ENST00000313860 KRTAP5-2Q701N4 177 aa1.73□□□□□ -2.13
LIMCH1-201ENST00000313860 KRTAP4-2Q9BYR5 136 aa1.67□□□□□ -2.14
LIMCH1-201ENST00000313860 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.15
LIMCH1-201ENST00000313860 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.55□□□□□ -2.16
LIMCH1-201ENST00000313860 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
LIMCH1-201ENST00000313860 KRTAP5-3Q6L8H2 238 aa1.39□□□□□ -2.19
LIMCH1-201ENST00000313860 MUC5BQ9HC84 5762 aaPredicted RBP1.36□□□□□ -2.19
LIMCH1-201ENST00000313860 MUC5ACP98088 5654 aa1.31□□□□□ -2.2
LIMCH1-201ENST00000313860 KRTAP5-9P26371 169 aa1.3□□□□□ -2.2
LIMCH1-201ENST00000313860 KRTAP5-4Q6L8H1 288 aa1.29□□□□□ -2.2
LIMCH1-201ENST00000313860 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
LIMCH1-201ENST00000313860 NEBP20929 6669 aa1.26□□□□□ -2.21
LIMCH1-201ENST00000313860 KRTAP5-1Q6L8H4 278 aa1.25□□□□□ -2.21
LIMCH1-201ENST00000313860 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
LIMCH1-201ENST00000313860 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
LIMCH1-201ENST00000313860 AHNAK2Q8IVF2 5795 aa1.14□□□□□ -2.23
LIMCH1-201ENST00000313860 KRTAP5-8O75690 187 aa1.12□□□□□ -2.23
LIMCH1-201ENST00000313860 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.24
LIMCH1-201ENST00000313860 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
LIMCH1-201ENST00000313860 KRTAP5-11Q6L8G4 156 aa1.08□□□□□ -2.24
LIMCH1-201ENST00000313860 AHNAKQ09666 5890 aaKnown RBP0.95□□□□□ -2.26
LIMCH1-201ENST00000313860 KRTAP5-7Q6L8G8 165 aa0.89□□□□□ -2.27
LIMCH1-201ENST00000313860 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 43.7 ms