RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 KRTAP19-5Q3LI72 72 aa6.8□□□□□ -1.32
HMGA1-201ENST00000311487 KRTAP19-7Q3SYF9 63 aa6.78□□□□□ -1.32
HMGA1-201ENST00000311487 SPRR2EP22531 72 aa6.7□□□□□ -1.34
HMGA1-201ENST00000311487 SPRR2BP35325 72 aa6.7□□□□□ -1.34
HMGA1-201ENST00000311487 SPRR2AP35326 72 aa6.7□□□□□ -1.34
HMGA1-201ENST00000311487 NEBP20929 6669 aa6.69□□□□□ -1.34
HMGA1-201ENST00000311487 MT1EP04732 61 aa6.68□□□□□ -1.34
HMGA1-201ENST00000311487 LCE1AQ5T7P2 110 aa6.66□□□□□ -1.34
HMGA1-201ENST00000311487 KRTAP12-3P60328 96 aa6.6□□□□□ -1.35
HMGA1-201ENST00000311487 SPRR5A0A1B0GTR4 108 aa6.59□□□□□ -1.35
HMGA1-201ENST00000311487 KRTAP19-3Q7Z4W3 81 aa6.5□□□□□ -1.37
HMGA1-201ENST00000311487 INE1O15225 51 aa6.48□□□□□ -1.37
HMGA1-201ENST00000311487 MT1LQ93083 61 aa6.48□□□□□ -1.37
HMGA1-201ENST00000311487 SPRR2DP22532 72 aa6.46□□□□□ -1.38
HMGA1-201ENST00000311487 LCE5AQ5TCM9 118 aa6.44□□□□□ -1.38
HMGA1-201ENST00000311487 DSTQ03001 7570 aaKnown RBP6.38□□□□□ -1.39
HMGA1-201ENST00000311487 MT1GP13640 62 aa6.37□□□□□ -1.39
HMGA1-201ENST00000311487 KRTAP4-7Q9BYR0 210 aa6.35□□□□□ -1.39
HMGA1-201ENST00000311487 MT1MQ8N339 61 aa6.33□□□□□ -1.4
HMGA1-201ENST00000311487 KRTAP4-3Q9BYR4 195 aa6.31□□□□□ -1.4
HMGA1-201ENST00000311487 KRTAP20-1Q3LI63 56 aa6.29□□□□□ -1.4
HMGA1-201ENST00000311487 LCE3BQ5TA77 95 aa6.23□□□□□ -1.41
HMGA1-201ENST00000311487 KRTAP2-3P0C7H8 128 aa6.23□□□□□ -1.41
HMGA1-201ENST00000311487 KRTAP2-4Q9BYR9 128 aa6.23□□□□□ -1.41
HMGA1-201ENST00000311487 LCE3CQ5T5A8 94 aa6.13□□□□□ -1.43
HMGA1-201ENST00000311487 KRTAP2-2Q9BYT5 123 aa6.07□□□□□ -1.44
HMGA1-201ENST00000311487 KRTAP2-1Q9BYU5 128 aa6.07□□□□□ -1.44
HMGA1-201ENST00000311487 LOC100996750A0A140TA64 210 aa5.99□□□□□ -1.45
HMGA1-201ENST00000311487 KRTAP19-4Q3LI73 84 aa5.99□□□□□ -1.45
HMGA1-201ENST00000311487 KRTAP9-6A8MVA2 160 aa5.86□□□□□ -1.47
HMGA1-201ENST00000311487 KRTAP4-9Q9BYQ8 210 aa5.78□□□□□ -1.48
HMGA1-201ENST00000311487 KRTAP5-5Q701N2 237 aaPredicted RBP5.72□□□□□ -1.49
HMGA1-201ENST00000311487 MT4P47944 62 aa5.7□□□□□ -1.5
HMGA1-201ENST00000311487 KRTAP5-4Q6L8H1 288 aa5.65□□□□□ -1.51
HMGA1-201ENST00000311487 LCE4AQ5TA78 99 aa5.62□□□□□ -1.51
HMGA1-201ENST00000311487 LCE1DQ5T752 114 aa5.62□□□□□ -1.51
HMGA1-201ENST00000311487 KRTAP4-6Q9BYQ5 205 aa5.58□□□□□ -1.52
HMGA1-201ENST00000311487 HMCN1Q96RW7 5635 aa5.52□□□□□ -1.53
HMGA1-201ENST00000311487 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
HMGA1-201ENST00000311487 KRTAP6-1Q3LI64 71 aa5.51□□□□□ -1.53
HMGA1-201ENST00000311487 MT1AP04731 61 aa5.47□□□□□ -1.53
HMGA1-201ENST00000311487 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
HMGA1-201ENST00000311487 KRTAP20-2Q3LI61 65 aa5.35□□□□□ -1.55
HMGA1-201ENST00000311487 KRTAP9-4Q9BYQ2 154 aa5.26□□□□□ -1.57
HMGA1-201ENST00000311487 KRTAP6-2Q3LI66 62 aa5.17□□□□□ -1.58
HMGA1-201ENST00000311487 KRTAP5-3Q6L8H2 238 aa5.15□□□□□ -1.58
HMGA1-201ENST00000311487 AHNAK2Q8IVF2 5795 aa5.05□□□□□ -1.6
HMGA1-201ENST00000311487 KRTAP5-2Q701N4 177 aa5.03□□□□□ -1.6
HMGA1-201ENST00000311487 OBSCNQ5VST9 7968 aa4.98□□□□□ -1.61
HMGA1-201ENST00000311487 MT3P25713 68 aa4.97□□□□□ -1.61
HMGA1-201ENST00000311487 GPR98Q8WXG9 6306 aa4.93□□□□□ -1.62
HMGA1-201ENST00000311487 KRTAP5-10Q6L8G5 202 aa4.88□□□□□ -1.63
HMGA1-201ENST00000311487 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
HMGA1-201ENST00000311487 LCE3DQ9BYE3 92 aa4.64□□□□□ -1.67
HMGA1-201ENST00000311487 KRTAP5-8O75690 187 aa4.59□□□□□ -1.67
HMGA1-201ENST00000311487 KRTAP5-7Q6L8G8 165 aa4.56□□□□□ -1.68
HMGA1-201ENST00000311487 LCE3EQ5T5B0 92 aa4.54□□□□□ -1.68
HMGA1-201ENST00000311487 KRTAP5-1Q6L8H4 278 aa4.47□□□□□ -1.69
HMGA1-201ENST00000311487 LCE1EQ5T753 118 aa4.38□□□□□ -1.71
HMGA1-201ENST00000311487 MUC5ACP98088 5654 aa4.3□□□□□ -1.72
HMGA1-201ENST00000311487 LCE1BQ5T7P3 118 aa4.27□□□□□ -1.73
HMGA1-201ENST00000311487 PRM1P04553 51 aa4.23□□□□□ -1.73
HMGA1-201ENST00000311487 KRTAP9-9Q9BYP9 154 aa4.23□□□□□ -1.73
HMGA1-201ENST00000311487 KRTAP4-2Q9BYR5 136 aa4.17□□□□□ -1.74
HMGA1-201ENST00000311487 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
HMGA1-201ENST00000311487 LCE1CQ5T751 118 aa4.1□□□□□ -1.75
HMGA1-201ENST00000311487 AHNAKQ09666 5890 aaKnown RBP3.92□□□□□ -1.78
HMGA1-201ENST00000311487 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.75□□□□□ -1.81
HMGA1-201ENST00000311487 KRTAP4-12Q9BQ66 201 aa3.74□□□□□ -1.81
HMGA1-201ENST00000311487 KRTAP5-11Q6L8G4 156 aa3.64□□□□□ -1.83
HMGA1-201ENST00000311487 KRTAP21-2Q3LI59 83 aa3.59□□□□□ -1.83
HMGA1-201ENST00000311487 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
HMGA1-201ENST00000311487 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
HMGA1-201ENST00000311487 PHGR1C9JFL3 82 aa3.17□□□□□ -1.9
HMGA1-201ENST00000311487 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
HMGA1-201ENST00000311487 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
HMGA1-201ENST00000311487 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 72.3 ms