RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 KRTAP19-3Q7Z4W3 81 aa6.16□□□□□ -1.42
USP48-201ENST00000308271 LCE3EQ5T5B0 92 aa6.15□□□□□ -1.42
USP48-201ENST00000308271 SPRR2DP22532 72 aa6.14□□□□□ -1.43
USP48-201ENST00000308271 LCE2AQ5TA79 106 aaPredicted RBP6.14□□□□□ -1.43
USP48-201ENST00000308271 KRTAP2-3P0C7H8 128 aa6.13□□□□□ -1.43
USP48-201ENST00000308271 KRTAP2-4Q9BYR9 128 aa6.13□□□□□ -1.43
USP48-201ENST00000308271 KRTAP2-1Q9BYU5 128 aa6.13□□□□□ -1.43
USP48-201ENST00000308271 KRTAP19-7Q3SYF9 63 aa6.07□□□□□ -1.44
USP48-201ENST00000308271 MUC2Q02817 5179 aa6.06□□□□□ -1.44
USP48-201ENST00000308271 KRTAP9-6A0A140TA67 174 aa6.05□□□□□ -1.44
USP48-201ENST00000308271 MT1MQ8N339 61 aa6□□□□□ -1.45
USP48-201ENST00000308271 LOC100996750A0A140TA64 210 aa5.94□□□□□ -1.46
USP48-201ENST00000308271 LCE2DQ5TA82 110 aaPredicted RBP5.92□□□□□ -1.46
USP48-201ENST00000308271 KRTAP9-6A8MVA2 160 aa5.91□□□□□ -1.46
USP48-201ENST00000308271 KRTAP19-6Q3LI70 58 aa5.9□□□□□ -1.47
USP48-201ENST00000308271 KRTAP4-3Q9BYR4 195 aa5.87□□□□□ -1.47
USP48-201ENST00000308271 PRM1P04553 51 aa5.79□□□□□ -1.48
USP48-201ENST00000308271 SYNE2Q8WXH0 6885 aaKnown RBP5.73□□□□□ -1.49
USP48-201ENST00000308271 OBSCNQ5VST9 7968 aa5.69□□□□□ -1.5
USP48-201ENST00000308271 KRTAP9-7A8MTY7 169 aa5.69□□□□□ -1.5
USP48-201ENST00000308271 MT3P25713 68 aa5.6□□□□□ -1.51
USP48-201ENST00000308271 MT1AP04731 61 aa5.59□□□□□ -1.51
USP48-201ENST00000308271 KRTAP4-9Q9BYQ8 210 aa5.56□□□□□ -1.52
USP48-201ENST00000308271 MT4P47944 62 aa5.53□□□□□ -1.52
USP48-201ENST00000308271 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
USP48-201ENST00000308271 KMT2DO14686 5537 aa5.45□□□□□ -1.54
USP48-201ENST00000308271 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
USP48-201ENST00000308271 USH2AO75445 5202 aa5.42□□□□□ -1.54
USP48-201ENST00000308271 KRTAP20-1Q3LI63 56 aa5.38□□□□□ -1.55
USP48-201ENST00000308271 KRTAP6-3Q3LI67 103 aa5.37□□□□□ -1.55
USP48-201ENST00000308271 MACF1Q9UPN3 7388 aaKnown RBP5.36□□□□□ -1.55
USP48-201ENST00000308271 KRTAP6-1Q3LI64 71 aa5.34□□□□□ -1.56
USP48-201ENST00000308271 LCE5AQ5TCM9 118 aa5.33□□□□□ -1.56
USP48-201ENST00000308271 FCGBPQ9Y6R7 5405 aaPredicted RBP5.32□□□□□ -1.56
USP48-201ENST00000308271 KRTAP6-2Q3LI66 62 aa5.22□□□□□ -1.57
USP48-201ENST00000308271 LCE1AQ5T7P2 110 aa5.16□□□□□ -1.58
USP48-201ENST00000308271 KRTAP9-4Q9BYQ2 154 aa5.13□□□□□ -1.59
USP48-201ENST00000308271 LCE1BQ5T7P3 118 aa5.04□□□□□ -1.6
USP48-201ENST00000308271 KRTAP2-2Q9BYT5 123 aa5.04□□□□□ -1.6
USP48-201ENST00000308271 SSPOA2VEC9 5147 aa5.02□□□□□ -1.61
USP48-201ENST00000308271 LCE1DQ5T752 114 aa5.01□□□□□ -1.61
USP48-201ENST00000308271 MDN1Q9NU22 5596 aa5.01□□□□□ -1.61
USP48-201ENST00000308271 MUC12Q9UKN1 5478 aa4.94□□□□□ -1.62
USP48-201ENST00000308271 NEBP20929 6669 aa4.83□□□□□ -1.64
USP48-201ENST00000308271 LCE4AQ5TA78 99 aa4.8□□□□□ -1.64
USP48-201ENST00000308271 GPR98Q8WXG9 6306 aa4.72□□□□□ -1.65
USP48-201ENST00000308271 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
USP48-201ENST00000308271 MUC19Q7Z5P9 8384 aa4.64□□□□□ -1.67
USP48-201ENST00000308271 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
USP48-201ENST00000308271 KRTAP4-6Q9BYQ5 205 aa4.37□□□□□ -1.71
USP48-201ENST00000308271 KRTAP4-11Q9BYQ6 195 aa4.26□□□□□ -1.73
USP48-201ENST00000308271 LCE1CQ5T751 118 aa4.24□□□□□ -1.73
USP48-201ENST00000308271 LCE1EQ5T753 118 aa4.24□□□□□ -1.73
USP48-201ENST00000308271 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
USP48-201ENST00000308271 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
USP48-201ENST00000308271 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
USP48-201ENST00000308271 MUC5ACP98088 5654 aa3.89□□□□□ -1.79
USP48-201ENST00000308271 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
USP48-201ENST00000308271 HMCN1Q96RW7 5635 aa3.79□□□□□ -1.8
USP48-201ENST00000308271 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
USP48-201ENST00000308271 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.82
USP48-201ENST00000308271 KRTAP4-12Q9BQ66 201 aa3.69□□□□□ -1.82
USP48-201ENST00000308271 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
USP48-201ENST00000308271 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
USP48-201ENST00000308271 KRTAP5-10Q6L8G5 202 aa3.5□□□□□ -1.85
USP48-201ENST00000308271 KRTAP5-2Q701N4 177 aa3.4□□□□□ -1.87
USP48-201ENST00000308271 KRTAP5-8O75690 187 aa3.37□□□□□ -1.87
USP48-201ENST00000308271 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
USP48-201ENST00000308271 KRTAP5-1Q6L8H4 278 aa2.99□□□□□ -1.93
USP48-201ENST00000308271 KRTAP21-2Q3LI59 83 aa2.97□□□□□ -1.93
USP48-201ENST00000308271 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
USP48-201ENST00000308271 KRTAP21-1Q3LI58 79 aa2.92□□□□□ -1.94
USP48-201ENST00000308271 KRTAP5-11Q6L8G4 156 aa2.9□□□□□ -1.95
USP48-201ENST00000308271 PHGR1C9JFL3 82 aa2.84□□□□□ -1.95
USP48-201ENST00000308271 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.83□□□□□ -1.96
USP48-201ENST00000308271 KRTAP5-7Q6L8G8 165 aa2.71□□□□□ -1.97
USP48-201ENST00000308271 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 10.7 ms