RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 MUC17Q685J3 4493 aa3.83□□□□□ -1.8
USP38-201ENST00000307017 KRTAP9-2Q9BYQ4 174 aa3.83□□□□□ -1.8
USP38-201ENST00000307017 KRTAP20-1Q3LI63 56 aa3.82□□□□□ -1.8
USP38-201ENST00000307017 MT1MQ8N339 61 aa3.79□□□□□ -1.8
USP38-201ENST00000307017 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
USP38-201ENST00000307017 MT3P25713 68 aa3.69□□□□□ -1.82
USP38-201ENST00000307017 KRTAP19-4Q3LI73 84 aa3.69□□□□□ -1.82
USP38-201ENST00000307017 KRTAP19-6Q3LI70 58 aa3.68□□□□□ -1.82
USP38-201ENST00000307017 LCE2AQ5TA79 106 aaPredicted RBP3.68□□□□□ -1.82
USP38-201ENST00000307017 HERC2O95714 4834 aa3.67□□□□□ -1.82
USP38-201ENST00000307017 RYR2Q92736 4967 aa3.64□□□□□ -1.83
USP38-201ENST00000307017 KRTAP19-2Q3LHN2 52 aa3.61□□□□□ -1.83
USP38-201ENST00000307017 FSIP2Q5CZC0 6907 aa3.6□□□□□ -1.83
USP38-201ENST00000307017 KRTAP9-7A8MTY7 169 aa3.57□□□□□ -1.84
USP38-201ENST00000307017 KRTAP6-2Q3LI66 62 aa3.56□□□□□ -1.84
USP38-201ENST00000307017 KRTAP2-3P0C7H8 128 aa3.55□□□□□ -1.84
USP38-201ENST00000307017 KRTAP2-4Q9BYR9 128 aa3.55□□□□□ -1.84
USP38-201ENST00000307017 KRTAP2-1Q9BYU5 128 aa3.55□□□□□ -1.84
USP38-201ENST00000307017 KIAA1109Q2LD37 5005 aa3.54□□□□□ -1.84
USP38-201ENST00000307017 HMCN2Q8NDA2 5059 aa3.5□□□□□ -1.85
USP38-201ENST00000307017 KRTAP6-1Q3LI64 71 aa3.49□□□□□ -1.85
USP38-201ENST00000307017 KRTAP19-7Q3SYF9 63 aa3.47□□□□□ -1.85
USP38-201ENST00000307017 KRTAP9-6A8MVA2 160 aa3.45□□□□□ -1.86
USP38-201ENST00000307017 BIRC6Q9NR09 4857 aa3.43□□□□□ -1.86
USP38-201ENST00000307017 MT1AP04731 61 aa3.38□□□□□ -1.87
USP38-201ENST00000307017 HERC1Q15751 4861 aa3.37□□□□□ -1.87
USP38-201ENST00000307017 PCLOQ9Y6V0 5065 aa3.34□□□□□ -1.87
USP38-201ENST00000307017 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
USP38-201ENST00000307017 KMT2DO14686 5537 aa3.31□□□□□ -1.88
USP38-201ENST00000307017 MUC2Q02817 5179 aa3.26□□□□□ -1.89
USP38-201ENST00000307017 KRTAP9-4Q9BYQ2 154 aa3.25□□□□□ -1.89
USP38-201ENST00000307017 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
USP38-201ENST00000307017 KRTAP4-11Q9BYQ6 195 aa3.2□□□□□ -1.9
USP38-201ENST00000307017 EPPK1P58107 5090 aaKnown RBP3.18□□□□□ -1.9
USP38-201ENST00000307017 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
USP38-201ENST00000307017 FAT4Q6V0I7 4981 aa3.17□□□□□ -1.9
USP38-201ENST00000307017 KRTAP2-2Q9BYT5 123 aa3.16□□□□□ -1.9
USP38-201ENST00000307017 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.13□□□□□ -1.91
USP38-201ENST00000307017 UBR4Q5T4S7 5183 aa3.12□□□□□ -1.91
USP38-201ENST00000307017 DSTQ03001 7570 aaKnown RBP3.1□□□□□ -1.91
USP38-201ENST00000307017 ABCA13Q86UQ4 5058 aa3.07□□□□□ -1.92
USP38-201ENST00000307017 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
USP38-201ENST00000307017 RNF213Q63HN8 5207 aa3.06□□□□□ -1.92
USP38-201ENST00000307017 KRTAP6-3Q3LI67 103 aa3.05□□□□□ -1.92
USP38-201ENST00000307017 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
USP38-201ENST00000307017 KRTAP4-6Q9BYQ5 205 aa3.02□□□□□ -1.93
USP38-201ENST00000307017 KRTAP4-12Q9BQ66 201 aa2.99□□□□□ -1.93
USP38-201ENST00000307017 KRTAP4-2Q9BYR5 136 aa2.99□□□□□ -1.93
USP38-201ENST00000307017 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
USP38-201ENST00000307017 SSPOA2VEC9 5147 aa2.83□□□□□ -1.96
USP38-201ENST00000307017 MACF1Q9UPN3 7388 aaKnown RBP2.69□□□□□ -1.98
USP38-201ENST00000307017 USH2AO75445 5202 aa2.67□□□□□ -1.98
USP38-201ENST00000307017 KRTAP5-5Q701N2 237 aaPredicted RBP2.57□□□□□ -2
USP38-201ENST00000307017 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
USP38-201ENST00000307017 MUC12Q9UKN1 5478 aa2.52□□□□□ -2.01
USP38-201ENST00000307017 NEBP20929 6669 aa2.39□□□□□ -2.03
USP38-201ENST00000307017 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
USP38-201ENST00000307017 KRTAP5-9P26371 169 aa2.27□□□□□ -2.05
USP38-201ENST00000307017 KRTAP5-4Q6L8H1 288 aa2.19□□□□□ -2.06
USP38-201ENST00000307017 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
USP38-201ENST00000307017 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
USP38-201ENST00000307017 MUC5ACP98088 5654 aa2□□□□□ -2.09
USP38-201ENST00000307017 KRTAP5-3Q6L8H2 238 aa1.96□□□□□ -2.1
USP38-201ENST00000307017 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
USP38-201ENST00000307017 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
USP38-201ENST00000307017 HMCN1Q96RW7 5635 aa1.85□□□□□ -2.11
USP38-201ENST00000307017 GPR98Q8WXG9 6306 aa1.82□□□□□ -2.12
USP38-201ENST00000307017 KRTAP5-1Q6L8H4 278 aa1.77□□□□□ -2.13
USP38-201ENST00000307017 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
USP38-201ENST00000307017 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
USP38-201ENST00000307017 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
USP38-201ENST00000307017 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
USP38-201ENST00000307017 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
USP38-201ENST00000307017 AHNAK2Q8IVF2 5795 aa1.33□□□□□ -2.2
USP38-201ENST00000307017 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
USP38-201ENST00000307017 KRTAP5-7Q6L8G8 165 aa1.27□□□□□ -2.21
USP38-201ENST00000307017 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 71 ms