RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 SPRR2DP22532 72 aa8.14□□□□□ -1.11
HOXD4-201ENST00000306324 KRTAP20-1Q3LI63 56 aa8.1□□□□□ -1.11
HOXD4-201ENST00000306324 KRTAP19-3Q7Z4W3 81 aa8.09□□□□□ -1.11
HOXD4-201ENST00000306324 KRTAP12-3P60328 96 aa8.04□□□□□ -1.12
HOXD4-201ENST00000306324 LCE5AQ5TCM9 118 aa8.03□□□□□ -1.12
HOXD4-201ENST00000306324 KRTAP2-3P0C7H8 128 aa8.01□□□□□ -1.13
HOXD4-201ENST00000306324 KRTAP2-4Q9BYR9 128 aa8.01□□□□□ -1.13
HOXD4-201ENST00000306324 KRTAP23-1A1A580 65 aa8□□□□□ -1.13
HOXD4-201ENST00000306324 MT1LQ93083 61 aa7.97□□□□□ -1.13
HOXD4-201ENST00000306324 MT1GP13640 62 aa7.95□□□□□ -1.14
HOXD4-201ENST00000306324 PP632Q6XCG6 107 aa7.9□□□□□ -1.14
HOXD4-201ENST00000306324 LCE3BQ5TA77 95 aa7.87□□□□□ -1.15
HOXD4-201ENST00000306324 MT1MQ8N339 61 aa7.83□□□□□ -1.16
HOXD4-201ENST00000306324 DSTQ03001 7570 aaKnown RBP7.82□□□□□ -1.16
HOXD4-201ENST00000306324 KRTAP2-2Q9BYT5 123 aa7.79□□□□□ -1.16
HOXD4-201ENST00000306324 KRTAP2-1Q9BYU5 128 aa7.79□□□□□ -1.16
HOXD4-201ENST00000306324 PRAC1Q96KF2 57 aa7.74□□□□□ -1.17
HOXD4-201ENST00000306324 KRTAP15-1Q3LI76 137 aa7.68□□□□□ -1.18
HOXD4-201ENST00000306324 KRTAP4-7Q9BYR0 210 aa7.65□□□□□ -1.18
HOXD4-201ENST00000306324 KRTAP4-3Q9BYR4 195 aa7.65□□□□□ -1.18
HOXD4-201ENST00000306324 KRTAP19-4Q3LI73 84 aa7.55□□□□□ -1.2
HOXD4-201ENST00000306324 H3BS24 57 aa7.47□□□□□ -1.21
HOXD4-201ENST00000306324 LCE3CQ5T5A8 94 aa7.45□□□□□ -1.22
HOXD4-201ENST00000306324 LOC100996750A0A140TA64 210 aa7.22□□□□□ -1.25
HOXD4-201ENST00000306324 KRTAP4-9Q9BYQ8 210 aa7.21□□□□□ -1.26
HOXD4-201ENST00000306324 LCE4AQ5TA78 99 aa7.19□□□□□ -1.26
HOXD4-201ENST00000306324 KRTAP5-4Q6L8H1 288 aa7.14□□□□□ -1.27
HOXD4-201ENST00000306324 KRTAP5-5Q701N2 237 aaPredicted RBP7.11□□□□□ -1.27
HOXD4-201ENST00000306324 MT4P47944 62 aa7.1□□□□□ -1.27
HOXD4-201ENST00000306324 LCE1DQ5T752 114 aa7.09□□□□□ -1.27
HOXD4-201ENST00000306324 KRTAP9-6A8MVA2 160 aa7.01□□□□□ -1.29
HOXD4-201ENST00000306324 HMCN1Q96RW7 5635 aa7.01□□□□□ -1.29
HOXD4-201ENST00000306324 KRTAP4-6Q9BYQ5 205 aa6.93□□□□□ -1.3
HOXD4-201ENST00000306324 SYNE1Q8NF91 8797 aaKnown RBP6.85□□□□□ -1.31
HOXD4-201ENST00000306324 KRTAP12-4P60329 112 aa6.83□□□□□ -1.32
HOXD4-201ENST00000306324 MT1AP04731 61 aa6.79□□□□□ -1.32
HOXD4-201ENST00000306324 KRTAP6-1Q3LI64 71 aa6.74□□□□□ -1.33
HOXD4-201ENST00000306324 SPRR5A0A1B0GTR4 108 aa6.73□□□□□ -1.33
HOXD4-201ENST00000306324 KRTAP20-2Q3LI61 65 aa6.73□□□□□ -1.33
HOXD4-201ENST00000306324 NDUFAF8A1L188 74 aa6.67□□□□□ -1.34
HOXD4-201ENST00000306324 GPR98Q8WXG9 6306 aa6.64□□□□□ -1.35
HOXD4-201ENST00000306324 AHNAK2Q8IVF2 5795 aa6.57□□□□□ -1.36
HOXD4-201ENST00000306324 KRTAP9-4Q9BYQ2 154 aa6.52□□□□□ -1.37
HOXD4-201ENST00000306324 KRTAP5-3Q6L8H2 238 aa6.5□□□□□ -1.37
HOXD4-201ENST00000306324 LUZP6Q538Z0 58 aa6.41□□□□□ -1.38
HOXD4-201ENST00000306324 KRTAP6-2Q3LI66 62 aa6.34□□□□□ -1.39
HOXD4-201ENST00000306324 KRTAP5-2Q701N4 177 aa6.34□□□□□ -1.39
HOXD4-201ENST00000306324 KRTAP5-10Q6L8G5 202 aa6.29□□□□□ -1.4
HOXD4-201ENST00000306324 A0A0A0MQY5 61 aa6.24□□□□□ -1.41
HOXD4-201ENST00000306324 MT3P25713 68 aa6.19□□□□□ -1.42
HOXD4-201ENST00000306324 OBSCNQ5VST9 7968 aa6.03□□□□□ -1.44
HOXD4-201ENST00000306324 KRTAP4-11Q9BYQ6 195 aa6.02□□□□□ -1.45
HOXD4-201ENST00000306324 KRTAP5-7Q6L8G8 165 aa5.96□□□□□ -1.45
HOXD4-201ENST00000306324 KRTAP5-8O75690 187 aa5.8□□□□□ -1.48
HOXD4-201ENST00000306324 INE1O15225 51 aa5.7□□□□□ -1.5
HOXD4-201ENST00000306324 KRTAP5-1Q6L8H4 278 aa5.6□□□□□ -1.51
HOXD4-201ENST00000306324 LCE1EQ5T753 118 aa5.54□□□□□ -1.52
HOXD4-201ENST00000306324 MUC5ACP98088 5654 aa5.51□□□□□ -1.53
HOXD4-201ENST00000306324 LCE3DQ9BYE3 92 aa5.48□□□□□ -1.53
HOXD4-201ENST00000306324 KRTAP9-9Q9BYP9 154 aa5.43□□□□□ -1.54
HOXD4-201ENST00000306324 MUC5BQ9HC84 5762 aaPredicted RBP5.32□□□□□ -1.56
HOXD4-201ENST00000306324 AHNAKQ09666 5890 aaKnown RBP5.24□□□□□ -1.57
HOXD4-201ENST00000306324 LCE3EQ5T5B0 92 aa5.24□□□□□ -1.57
HOXD4-201ENST00000306324 LCE1BQ5T7P3 118 aa5.24□□□□□ -1.57
HOXD4-201ENST00000306324 KRTAP4-2Q9BYR5 136 aa5.2□□□□□ -1.58
HOXD4-201ENST00000306324 LCE1CQ5T751 118 aa5.14□□□□□ -1.59
HOXD4-201ENST00000306324 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.73□□□□□ -1.65
HOXD4-201ENST00000306324 KRTAP5-11Q6L8G4 156 aa4.62□□□□□ -1.67
HOXD4-201ENST00000306324 KRTAP4-12Q9BQ66 201 aa4.57□□□□□ -1.68
HOXD4-201ENST00000306324 KRTAP21-2Q3LI59 83 aa4.41□□□□□ -1.7
HOXD4-201ENST00000306324 LCE1FQ5T754 118 aa4.36□□□□□ -1.71
HOXD4-201ENST00000306324 PRM1P04553 51 aa4.23□□□□□ -1.73
HOXD4-201ENST00000306324 KRTAP4-4Q9BYR3 166 aa4.02□□□□□ -1.77
HOXD4-201ENST00000306324 PHGR1C9JFL3 82 aa3.98□□□□□ -1.77
HOXD4-201ENST00000306324 MUC19Q7Z5P9 8384 aa3.68□□□□□ -1.82
HOXD4-201ENST00000306324 KRTAP21-1Q3LI58 79 aa2.75□□□□□ -1.97
HOXD4-201ENST00000306324 MUC16Q8WXI7 14507 aa2.55□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 277.8 ms