RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 BRK1Q8WUW1 75 aa3.65□□□□□ -1.83
RFX3-201ENST00000302303 TNP1P09430 55 aa3.63□□□□□ -1.83
RFX3-201ENST00000302303 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
RFX3-201ENST00000302303 LCE3AQ5TA76 89 aa3.6□□□□□ -1.83
RFX3-201ENST00000302303 ROMO1P60602 79 aa3.58□□□□□ -1.84
RFX3-201ENST00000302303 KRTAP25-1Q3LHN0 102 aa3.58□□□□□ -1.84
RFX3-201ENST00000302303 KRTAP19-7Q3SYF9 63 aa3.58□□□□□ -1.84
RFX3-201ENST00000302303 SPRR2FQ96RM1 72 aa3.55□□□□□ -1.84
RFX3-201ENST00000302303 MUC12Q9UKN1 5478 aa3.55□□□□□ -1.84
RFX3-201ENST00000302303 NDUFAF8A1L188 74 aa3.54□□□□□ -1.84
RFX3-201ENST00000302303 KRTAP19-5Q3LI72 72 aa3.53□□□□□ -1.84
RFX3-201ENST00000302303 MT1EP04732 61 aa3.5□□□□□ -1.85
RFX3-201ENST00000302303 MDN1Q9NU22 5596 aa3.5□□□□□ -1.85
RFX3-201ENST00000302303 LCE1AQ5T7P2 110 aa3.49□□□□□ -1.85
RFX3-201ENST00000302303 NEBP20929 6669 aa3.48□□□□□ -1.85
RFX3-201ENST00000302303 PRO0628Q9UI54 55 aa3.46□□□□□ -1.86
RFX3-201ENST00000302303 PMAIP1Q13794 54 aa3.44□□□□□ -1.86
RFX3-201ENST00000302303 SPRR2EP22531 72 aa3.43□□□□□ -1.86
RFX3-201ENST00000302303 SPRR2BP35325 72 aa3.43□□□□□ -1.86
RFX3-201ENST00000302303 SPRR2AP35326 72 aa3.43□□□□□ -1.86
RFX3-201ENST00000302303 KRTAP12-3P60328 96 aa3.43□□□□□ -1.86
RFX3-201ENST00000302303 MT3P25713 68 aa3.42□□□□□ -1.86
RFX3-201ENST00000302303 MT1LQ93083 61 aa3.4□□□□□ -1.86
RFX3-201ENST00000302303 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
RFX3-201ENST00000302303 PP632Q6XCG6 107 aa3.38□□□□□ -1.87
RFX3-201ENST00000302303 MT1GP13640 62 aa3.34□□□□□ -1.87
RFX3-201ENST00000302303 MT1MQ8N339 61 aa3.31□□□□□ -1.88
RFX3-201ENST00000302303 SPRR2DP22532 72 aa3.3□□□□□ -1.88
RFX3-201ENST00000302303 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
RFX3-201ENST00000302303 DSTQ03001 7570 aaKnown RBP3.27□□□□□ -1.89
RFX3-201ENST00000302303 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
RFX3-201ENST00000302303 KTN1-AS1Q86SY8 53 aa3.23□□□□□ -1.89
RFX3-201ENST00000302303 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
RFX3-201ENST00000302303 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
RFX3-201ENST00000302303 LCE3CQ5T5A8 94 aa3.2□□□□□ -1.9
RFX3-201ENST00000302303 KRTAP2-2Q9BYT5 123 aa3.19□□□□□ -1.9
RFX3-201ENST00000302303 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.14□□□□□ -1.91
RFX3-201ENST00000302303 KRTAP2-1Q9BYU5 128 aa3.14□□□□□ -1.91
RFX3-201ENST00000302303 KRTAP9-6A8MVA2 160 aa3.09□□□□□ -1.91
RFX3-201ENST00000302303 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
RFX3-201ENST00000302303 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
RFX3-201ENST00000302303 KRTAP5-4Q6L8H1 288 aa3.02□□□□□ -1.93
RFX3-201ENST00000302303 SPRR5A0A1B0GTR4 108 aa2.99□□□□□ -1.93
RFX3-201ENST00000302303 SYNE1Q8NF91 8797 aaKnown RBP2.9□□□□□ -1.94
RFX3-201ENST00000302303 MT1AP04731 61 aa2.88□□□□□ -1.95
RFX3-201ENST00000302303 MT4P47944 62 aa2.88□□□□□ -1.95
RFX3-201ENST00000302303 KRTAP6-1Q3LI64 71 aa2.88□□□□□ -1.95
RFX3-201ENST00000302303 HMCN1Q96RW7 5635 aa2.84□□□□□ -1.95
RFX3-201ENST00000302303 KRTAP20-2Q3LI61 65 aa2.8□□□□□ -1.96
RFX3-201ENST00000302303 KRTAP12-4P60329 112 aa2.79□□□□□ -1.96
RFX3-201ENST00000302303 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
RFX3-201ENST00000302303 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
RFX3-201ENST00000302303 LCE1EQ5T753 118 aa2.68□□□□□ -1.98
RFX3-201ENST00000302303 KRTAP6-2Q3LI66 62 aa2.67□□□□□ -1.98
RFX3-201ENST00000302303 LUZP6Q538Z0 58 aa2.67□□□□□ -1.98
RFX3-201ENST00000302303 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
RFX3-201ENST00000302303 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
RFX3-201ENST00000302303 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
RFX3-201ENST00000302303 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
RFX3-201ENST00000302303 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
RFX3-201ENST00000302303 OBSCNQ5VST9 7968 aa2.53□□□□□ -2
RFX3-201ENST00000302303 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
RFX3-201ENST00000302303 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
RFX3-201ENST00000302303 KRTAP5-7Q6L8G8 165 aa2.4□□□□□ -2.03
RFX3-201ENST00000302303 LCE3DQ9BYE3 92 aa2.35□□□□□ -2.03
RFX3-201ENST00000302303 MUC5ACP98088 5654 aa2.24□□□□□ -2.05
RFX3-201ENST00000302303 LCE1CQ5T751 118 aa2.18□□□□□ -2.06
RFX3-201ENST00000302303 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
RFX3-201ENST00000302303 MUC5BQ9HC84 5762 aaPredicted RBP2.09□□□□□ -2.07
RFX3-201ENST00000302303 INE1O15225 51 aa2.05□□□□□ -2.08
RFX3-201ENST00000302303 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
RFX3-201ENST00000302303 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
RFX3-201ENST00000302303 PRM1P04553 51 aa1.86□□□□□ -2.11
RFX3-201ENST00000302303 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
RFX3-201ENST00000302303 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
RFX3-201ENST00000302303 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
RFX3-201ENST00000302303 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 194.8 ms