RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MT1LQ93083 61 aa5.1□□□□□ -1.59
SHH-201ENST00000297261 KMT2DO14686 5537 aa5.09□□□□□ -1.59
SHH-201ENST00000297261 KRTAP9-2Q9BYQ4 174 aa5.09□□□□□ -1.59
SHH-201ENST00000297261 KRTAP19-7Q3SYF9 63 aa5.07□□□□□ -1.6
SHH-201ENST00000297261 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
SHH-201ENST00000297261 SPRR2EP22531 72 aa4.99□□□□□ -1.61
SHH-201ENST00000297261 SPRR2BP35325 72 aa4.99□□□□□ -1.61
SHH-201ENST00000297261 SPRR2AP35326 72 aa4.99□□□□□ -1.61
SHH-201ENST00000297261 LCE3DQ9BYE3 92 aa4.91□□□□□ -1.62
SHH-201ENST00000297261 SSPOA2VEC9 5147 aa4.89□□□□□ -1.63
SHH-201ENST00000297261 MT1MQ8N339 61 aa4.88□□□□□ -1.63
SHH-201ENST00000297261 KRTAP4-3Q9BYR4 195 aa4.87□□□□□ -1.63
SHH-201ENST00000297261 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
SHH-201ENST00000297261 LCE3EQ5T5B0 92 aa4.85□□□□□ -1.63
SHH-201ENST00000297261 SPRR2DP22532 72 aa4.8□□□□□ -1.64
SHH-201ENST00000297261 KRTAP9-6A8MVA2 160 aa4.8□□□□□ -1.64
SHH-201ENST00000297261 KRTAP2-3P0C7H8 128 aa4.78□□□□□ -1.64
SHH-201ENST00000297261 KRTAP2-4Q9BYR9 128 aa4.78□□□□□ -1.64
SHH-201ENST00000297261 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
SHH-201ENST00000297261 FCGBPQ9Y6R7 5405 aaPredicted RBP4.77□□□□□ -1.65
SHH-201ENST00000297261 DSTQ03001 7570 aaKnown RBP4.72□□□□□ -1.65
SHH-201ENST00000297261 PRM1P04553 51 aa4.68□□□□□ -1.66
SHH-201ENST00000297261 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
SHH-201ENST00000297261 KRTAP9-6A0A140TA67 174 aa4.64□□□□□ -1.67
SHH-201ENST00000297261 MACF1Q9UPN3 7388 aaKnown RBP4.64□□□□□ -1.67
SHH-201ENST00000297261 SYNE2Q8WXH0 6885 aaKnown RBP4.63□□□□□ -1.67
SHH-201ENST00000297261 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
SHH-201ENST00000297261 LCE5AQ5TCM9 118 aa4.59□□□□□ -1.67
SHH-201ENST00000297261 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
SHH-201ENST00000297261 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.49□□□□□ -1.69
SHH-201ENST00000297261 KRTAP6-3Q3LI67 103 aa4.45□□□□□ -1.7
SHH-201ENST00000297261 MT1AP04731 61 aa4.38□□□□□ -1.71
SHH-201ENST00000297261 KRTAP9-7A8MTY7 169 aa4.36□□□□□ -1.71
SHH-201ENST00000297261 KRTAP5-9P26371 169 aa4.33□□□□□ -1.72
SHH-201ENST00000297261 MT3P25713 68 aa4.33□□□□□ -1.72
SHH-201ENST00000297261 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
SHH-201ENST00000297261 MT4P47944 62 aa4.28□□□□□ -1.72
SHH-201ENST00000297261 MDN1Q9NU22 5596 aa4.23□□□□□ -1.73
SHH-201ENST00000297261 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
SHH-201ENST00000297261 KRTAP9-4Q9BYQ2 154 aa4.1□□□□□ -1.75
SHH-201ENST00000297261 LCE1DQ5T752 114 aa4.05□□□□□ -1.76
SHH-201ENST00000297261 LCE1BQ5T7P3 118 aa4.05□□□□□ -1.76
SHH-201ENST00000297261 KRTAP20-1Q3LI63 56 aa4.02□□□□□ -1.77
SHH-201ENST00000297261 MUC19Q7Z5P9 8384 aa3.98□□□□□ -1.77
SHH-201ENST00000297261 KRTAP2-2Q9BYT5 123 aa3.96□□□□□ -1.78
SHH-201ENST00000297261 NEBP20929 6669 aa3.95□□□□□ -1.78
SHH-201ENST00000297261 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
SHH-201ENST00000297261 KRTAP5-5Q701N2 237 aaPredicted RBP3.83□□□□□ -1.8
SHH-201ENST00000297261 KRTAP4-6Q9BYQ5 205 aa3.8□□□□□ -1.8
SHH-201ENST00000297261 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
SHH-201ENST00000297261 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.84
SHH-201ENST00000297261 KRTAP5-4Q6L8H1 288 aa3.55□□□□□ -1.84
SHH-201ENST00000297261 KRTAP4-11Q9BYQ6 195 aa3.52□□□□□ -1.85
SHH-201ENST00000297261 LCE1EQ5T753 118 aa3.41□□□□□ -1.86
SHH-201ENST00000297261 HMCN1Q96RW7 5635 aa3.35□□□□□ -1.87
SHH-201ENST00000297261 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
SHH-201ENST00000297261 KRTAP5-3Q6L8H2 238 aa3.19□□□□□ -1.9
SHH-201ENST00000297261 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
SHH-201ENST00000297261 LCE1CQ5T751 118 aa3.15□□□□□ -1.9
SHH-201ENST00000297261 LCE1FQ5T754 118 aa3.15□□□□□ -1.9
SHH-201ENST00000297261 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
SHH-201ENST00000297261 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
SHH-201ENST00000297261 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
SHH-201ENST00000297261 KRTAP4-12Q9BQ66 201 aa2.87□□□□□ -1.95
SHH-201ENST00000297261 KRTAP4-2Q9BYR5 136 aa2.87□□□□□ -1.95
SHH-201ENST00000297261 KRTAP5-8O75690 187 aa2.85□□□□□ -1.95
SHH-201ENST00000297261 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
SHH-201ENST00000297261 KRTAP5-10Q6L8G5 202 aa2.78□□□□□ -1.96
SHH-201ENST00000297261 KRTAP5-7Q6L8G8 165 aa2.78□□□□□ -1.96
SHH-201ENST00000297261 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
SHH-201ENST00000297261 MUC5BQ9HC84 5762 aaPredicted RBP2.57□□□□□ -2
SHH-201ENST00000297261 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
SHH-201ENST00000297261 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
SHH-201ENST00000297261 AHNAKQ09666 5890 aaKnown RBP2.34□□□□□ -2.03
SHH-201ENST00000297261 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
SHH-201ENST00000297261 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
SHH-201ENST00000297261 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 219.5 ms