RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 SYNE2Q8WXH0 6885 aaKnown RBP7.48□□□□□ -1.21
YBX3-202ENST00000279550 LCE3CQ5T5A8 94 aa7.47□□□□□ -1.21
YBX3-202ENST00000279550 KRTAP6-3Q3LI67 103 aa7.44□□□□□ -1.22
YBX3-202ENST00000279550 MT1LQ93083 61 aa7.41□□□□□ -1.22
YBX3-202ENST00000279550 MUC12Q9UKN1 5478 aa7.4□□□□□ -1.22
YBX3-202ENST00000279550 H3BS24 57 aa7.36□□□□□ -1.23
YBX3-202ENST00000279550 KRTAP9-7A8MTY7 169 aa7.33□□□□□ -1.24
YBX3-202ENST00000279550 KRTAP4-7Q9BYR0 210 aa7.32□□□□□ -1.24
YBX3-202ENST00000279550 KRTAP19-3Q7Z4W3 81 aa7.27□□□□□ -1.25
YBX3-202ENST00000279550 MDN1Q9NU22 5596 aa7.23□□□□□ -1.25
YBX3-202ENST00000279550 LCE1AQ5T7P2 110 aa7.22□□□□□ -1.25
YBX3-202ENST00000279550 KRTAP19-4Q3LI73 84 aa7.21□□□□□ -1.25
YBX3-202ENST00000279550 MT1GP13640 62 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 SPRR2EP22531 72 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 SPRR2BP35325 72 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 SPRR2AP35326 72 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 KRTAP9-6A8MVA2 160 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 LCE5AQ5TCM9 118 aa7.18□□□□□ -1.26
YBX3-202ENST00000279550 KRTAP4-12Q9BQ66 201 aa7.15□□□□□ -1.27
YBX3-202ENST00000279550 LCE3BQ5TA77 95 aa7.09□□□□□ -1.27
YBX3-202ENST00000279550 MT1MQ8N339 61 aa7.09□□□□□ -1.27
YBX3-202ENST00000279550 KRTAP4-3Q9BYR4 195 aa7.04□□□□□ -1.28
YBX3-202ENST00000279550 SPRR2DP22532 72 aa6.93□□□□□ -1.3
YBX3-202ENST00000279550 KRTAP9-9Q9BYP9 154 aa6.87□□□□□ -1.31
YBX3-202ENST00000279550 KRTAP9-4Q9BYQ2 154 aa6.87□□□□□ -1.31
YBX3-202ENST00000279550 NEBP20929 6669 aa6.81□□□□□ -1.32
YBX3-202ENST00000279550 DSTQ03001 7570 aaKnown RBP6.8□□□□□ -1.32
YBX3-202ENST00000279550 A0A0A0MQY5 61 aa6.78□□□□□ -1.32
YBX3-202ENST00000279550 KRTAP2-3P0C7H8 128 aa6.69□□□□□ -1.34
YBX3-202ENST00000279550 KRTAP2-4Q9BYR9 128 aa6.69□□□□□ -1.34
YBX3-202ENST00000279550 KRTAP2-1Q9BYU5 128 aa6.69□□□□□ -1.34
YBX3-202ENST00000279550 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
YBX3-202ENST00000279550 LCE4AQ5TA78 99 aa6.6□□□□□ -1.35
YBX3-202ENST00000279550 KRTAP20-1Q3LI63 56 aa6.48□□□□□ -1.37
YBX3-202ENST00000279550 KRTAP5-5Q701N2 237 aaPredicted RBP6.43□□□□□ -1.38
YBX3-202ENST00000279550 KRTAP2-2Q9BYT5 123 aa6.4□□□□□ -1.38
YBX3-202ENST00000279550 KRTAP4-9Q9BYQ8 210 aa6.39□□□□□ -1.39
YBX3-202ENST00000279550 INE1O15225 51 aa6.3□□□□□ -1.4
YBX3-202ENST00000279550 KRTAP6-1Q3LI64 71 aa6.27□□□□□ -1.41
YBX3-202ENST00000279550 MT1AP04731 61 aa6.25□□□□□ -1.41
YBX3-202ENST00000279550 KRTAP5-4Q6L8H1 288 aa6.22□□□□□ -1.41
YBX3-202ENST00000279550 KRTAP4-11Q9BYQ6 195 aa6.19□□□□□ -1.42
YBX3-202ENST00000279550 KRTAP4-2Q9BYR5 136 aa6.18□□□□□ -1.42
YBX3-202ENST00000279550 MT4P47944 62 aa6.02□□□□□ -1.45
YBX3-202ENST00000279550 KRTAP12-4P60329 112 aa6.01□□□□□ -1.45
YBX3-202ENST00000279550 SYNE1Q8NF91 8797 aaKnown RBP5.99□□□□□ -1.45
YBX3-202ENST00000279550 KRTAP20-2Q3LI61 65 aa5.83□□□□□ -1.48
YBX3-202ENST00000279550 HMCN1Q96RW7 5635 aa5.82□□□□□ -1.48
YBX3-202ENST00000279550 KRTAP6-2Q3LI66 62 aa5.74□□□□□ -1.49
YBX3-202ENST00000279550 MT3P25713 68 aa5.66□□□□□ -1.5
YBX3-202ENST00000279550 LCE3DQ9BYE3 92 aa5.63□□□□□ -1.51
YBX3-202ENST00000279550 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
YBX3-202ENST00000279550 KRTAP5-2Q701N4 177 aa5.62□□□□□ -1.51
YBX3-202ENST00000279550 LCE3EQ5T5B0 92 aa5.51□□□□□ -1.53
YBX3-202ENST00000279550 OBSCNQ5VST9 7968 aa5.27□□□□□ -1.57
YBX3-202ENST00000279550 AHNAK2Q8IVF2 5795 aa5.19□□□□□ -1.58
YBX3-202ENST00000279550 KRTAP5-10Q6L8G5 202 aa5.06□□□□□ -1.6
YBX3-202ENST00000279550 PRM1P04553 51 aa5.01□□□□□ -1.61
YBX3-202ENST00000279550 LCE1EQ5T753 118 aa4.97□□□□□ -1.61
YBX3-202ENST00000279550 KRTAP5-8O75690 187 aa4.91□□□□□ -1.62
YBX3-202ENST00000279550 KRTAP5-1Q6L8H4 278 aa4.89□□□□□ -1.63
YBX3-202ENST00000279550 GPR98Q8WXG9 6306 aa4.75□□□□□ -1.65
YBX3-202ENST00000279550 KRTAP5-7Q6L8G8 165 aa4.72□□□□□ -1.65
YBX3-202ENST00000279550 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
YBX3-202ENST00000279550 MUC5ACP98088 5654 aa4.64□□□□□ -1.67
YBX3-202ENST00000279550 LCE1CQ5T751 118 aa4.63□□□□□ -1.67
YBX3-202ENST00000279550 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.31□□□□□ -1.72
YBX3-202ENST00000279550 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
YBX3-202ENST00000279550 KRTAP5-11Q6L8G4 156 aa4.15□□□□□ -1.75
YBX3-202ENST00000279550 KRTAP21-2Q3LI59 83 aa4.08□□□□□ -1.76
YBX3-202ENST00000279550 AHNAKQ09666 5890 aaKnown RBP3.9□□□□□ -1.79
YBX3-202ENST00000279550 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
YBX3-202ENST00000279550 KRTAP4-4Q9BYR3 166 aa3.7□□□□□ -1.82
YBX3-202ENST00000279550 PHGR1C9JFL3 82 aa3.53□□□□□ -1.84
YBX3-202ENST00000279550 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
YBX3-202ENST00000279550 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
YBX3-202ENST00000279550 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 102 ms