RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 INE1O15225 51 aa4.78□□□□□ -1.64
C9orf3-201ENST00000277198 KRTAP19-5Q3LI72 72 aa4.76□□□□□ -1.65
C9orf3-201ENST00000277198 KRTAP4-8A0A0G2JLE6 195 aa4.75□□□□□ -1.65
C9orf3-201ENST00000277198 KRTAP4-8Q9BYQ9 185 aa4.75□□□□□ -1.65
C9orf3-201ENST00000277198 LCE3CQ5T5A8 94 aa4.74□□□□□ -1.65
C9orf3-201ENST00000277198 SPRR2FQ96RM1 72 aa4.73□□□□□ -1.65
C9orf3-201ENST00000277198 KRTAP19-4Q3LI73 84 aa4.7□□□□□ -1.66
C9orf3-201ENST00000277198 SPRR2EP22531 72 aa4.64□□□□□ -1.67
C9orf3-201ENST00000277198 SPRR2BP35325 72 aa4.64□□□□□ -1.67
C9orf3-201ENST00000277198 SPRR2AP35326 72 aa4.64□□□□□ -1.67
C9orf3-201ENST00000277198 KRTAP20-1Q3LI63 56 aa4.64□□□□□ -1.67
C9orf3-201ENST00000277198 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
C9orf3-201ENST00000277198 KRTAP19-7Q3SYF9 63 aa4.58□□□□□ -1.68
C9orf3-201ENST00000277198 KRTAP2-3P0C7H8 128 aa4.5□□□□□ -1.69
C9orf3-201ENST00000277198 KRTAP2-4Q9BYR9 128 aa4.5□□□□□ -1.69
C9orf3-201ENST00000277198 KRTAP9-6A8MVA2 160 aa4.49□□□□□ -1.69
C9orf3-201ENST00000277198 SPRR2DP22532 72 aa4.47□□□□□ -1.69
C9orf3-201ENST00000277198 MT1EP04732 61 aa4.45□□□□□ -1.7
C9orf3-201ENST00000277198 MT1LQ93083 61 aa4.45□□□□□ -1.7
C9orf3-201ENST00000277198 KRTAP2-1Q9BYU5 128 aa4.44□□□□□ -1.7
C9orf3-201ENST00000277198 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
C9orf3-201ENST00000277198 KRTAP2-2Q9BYT5 123 aa4.36□□□□□ -1.71
C9orf3-201ENST00000277198 LCE3BQ5TA77 95 aa4.35□□□□□ -1.71
C9orf3-201ENST00000277198 LCE5AQ5TCM9 118 aa4.3□□□□□ -1.72
C9orf3-201ENST00000277198 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
C9orf3-201ENST00000277198 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
C9orf3-201ENST00000277198 MT1GP13640 62 aa4.2□□□□□ -1.74
C9orf3-201ENST00000277198 MT1MQ8N339 61 aa4.15□□□□□ -1.74
C9orf3-201ENST00000277198 KRTAP4-3Q9BYR4 195 aa4.13□□□□□ -1.75
C9orf3-201ENST00000277198 KRTAP4-9Q9BYQ8 210 aa4.1□□□□□ -1.75
C9orf3-201ENST00000277198 LOC100996750A0A140TA64 210 aa4.08□□□□□ -1.76
C9orf3-201ENST00000277198 LCE1DQ5T752 114 aa3.98□□□□□ -1.77
C9orf3-201ENST00000277198 MT4P47944 62 aa3.95□□□□□ -1.78
C9orf3-201ENST00000277198 HMCN1Q96RW7 5635 aa3.94□□□□□ -1.78
C9orf3-201ENST00000277198 LCE4AQ5TA78 99 aa3.91□□□□□ -1.78
C9orf3-201ENST00000277198 GPR98Q8WXG9 6306 aa3.9□□□□□ -1.79
C9orf3-201ENST00000277198 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
C9orf3-201ENST00000277198 KRTAP12-4P60329 112 aa3.88□□□□□ -1.79
C9orf3-201ENST00000277198 KRTAP4-6Q9BYQ5 205 aa3.87□□□□□ -1.79
C9orf3-201ENST00000277198 MT1AP04731 61 aa3.83□□□□□ -1.8
C9orf3-201ENST00000277198 KRTAP5-5Q701N2 237 aaPredicted RBP3.8□□□□□ -1.8
C9orf3-201ENST00000277198 AHNAK2Q8IVF2 5795 aa3.76□□□□□ -1.81
C9orf3-201ENST00000277198 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
C9orf3-201ENST00000277198 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
C9orf3-201ENST00000277198 KRTAP20-2Q3LI61 65 aa3.69□□□□□ -1.82
C9orf3-201ENST00000277198 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.82
C9orf3-201ENST00000277198 KRTAP5-10Q6L8G5 202 aa3.65□□□□□ -1.83
C9orf3-201ENST00000277198 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
C9orf3-201ENST00000277198 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
C9orf3-201ENST00000277198 KRTAP9-4Q9BYQ2 154 aa3.55□□□□□ -1.84
C9orf3-201ENST00000277198 KRTAP5-7Q6L8G8 165 aa3.47□□□□□ -1.85
C9orf3-201ENST00000277198 KRTAP5-2Q701N4 177 aa3.43□□□□□ -1.86
C9orf3-201ENST00000277198 MT3P25713 68 aa3.41□□□□□ -1.86
C9orf3-201ENST00000277198 PRM1P04553 51 aa3.4□□□□□ -1.86
C9orf3-201ENST00000277198 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
C9orf3-201ENST00000277198 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.87
C9orf3-201ENST00000277198 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
C9orf3-201ENST00000277198 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
C9orf3-201ENST00000277198 MUC5BQ9HC84 5762 aaPredicted RBP3.09□□□□□ -1.91
C9orf3-201ENST00000277198 KRTAP5-1Q6L8H4 278 aa3.09□□□□□ -1.92
C9orf3-201ENST00000277198 MUC5ACP98088 5654 aa3.04□□□□□ -1.92
C9orf3-201ENST00000277198 AHNAKQ09666 5890 aaKnown RBP3.03□□□□□ -1.92
C9orf3-201ENST00000277198 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
C9orf3-201ENST00000277198 LCE1EQ5T753 118 aa2.9□□□□□ -1.95
C9orf3-201ENST00000277198 KRTAP4-2Q9BYR5 136 aa2.81□□□□□ -1.96
C9orf3-201ENST00000277198 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
C9orf3-201ENST00000277198 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
C9orf3-201ENST00000277198 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
C9orf3-201ENST00000277198 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
C9orf3-201ENST00000277198 KRTAP5-11Q6L8G4 156 aa2.46□□□□□ -2.02
C9orf3-201ENST00000277198 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
C9orf3-201ENST00000277198 LCE1FQ5T754 118 aa2.32□□□□□ -2.04
C9orf3-201ENST00000277198 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
C9orf3-201ENST00000277198 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
C9orf3-201ENST00000277198 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
C9orf3-201ENST00000277198 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
C9orf3-201ENST00000277198 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 78.5 ms