RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CDC42SE1Q9NRR8 79 aa4.72□□□□□ -1.65
SS18-202ENST00000269138 LCE1DQ5T752 114 aa4.68□□□□□ -1.66
SS18-202ENST00000269138 KRTAP25-1Q3LHN0 102 aa4.67□□□□□ -1.66
SS18-202ENST00000269138 KRTAP20-1Q3LI63 56 aa4.67□□□□□ -1.66
SS18-202ENST00000269138 SPRR2DP22532 72 aa4.67□□□□□ -1.66
SS18-202ENST00000269138 KRTAP4-7Q9BYR0 210 aa4.64□□□□□ -1.67
SS18-202ENST00000269138 H3BS24 57 aa4.63□□□□□ -1.67
SS18-202ENST00000269138 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
SS18-202ENST00000269138 KRTAP2-3P0C7H8 128 aa4.62□□□□□ -1.67
SS18-202ENST00000269138 KRTAP19-3Q7Z4W3 81 aa4.62□□□□□ -1.67
SS18-202ENST00000269138 KRTAP2-4Q9BYR9 128 aa4.62□□□□□ -1.67
SS18-202ENST00000269138 LCE5AQ5TCM9 118 aa4.6□□□□□ -1.67
SS18-202ENST00000269138 ROMO1P60602 79 aa4.58□□□□□ -1.68
SS18-202ENST00000269138 MT1LQ93083 61 aa4.56□□□□□ -1.68
SS18-202ENST00000269138 KRTAP12-3P60328 96 aa4.56□□□□□ -1.68
SS18-202ENST00000269138 KRTAP4-9Q9BYQ8 210 aa4.55□□□□□ -1.68
SS18-202ENST00000269138 MT1GP13640 62 aa4.53□□□□□ -1.68
SS18-202ENST00000269138 KRTAP19-4Q3LI73 84 aa4.52□□□□□ -1.69
SS18-202ENST00000269138 KRTAP23-1A1A580 65 aa4.5□□□□□ -1.69
SS18-202ENST00000269138 BRK1Q8WUW1 75 aa4.5□□□□□ -1.69
SS18-202ENST00000269138 MT1MQ8N339 61 aa4.48□□□□□ -1.69
SS18-202ENST00000269138 KRTAP2-2Q9BYT5 123 aa4.48□□□□□ -1.69
SS18-202ENST00000269138 KRTAP2-1Q9BYU5 128 aa4.48□□□□□ -1.69
SS18-202ENST00000269138 PP632Q6XCG6 107 aa4.46□□□□□ -1.69
SS18-202ENST00000269138 KRTAP4-2Q9BYR5 136 aa4.45□□□□□ -1.7
SS18-202ENST00000269138 KRTAP4-3Q9BYR4 195 aa4.41□□□□□ -1.7
SS18-202ENST00000269138 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
SS18-202ENST00000269138 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
SS18-202ENST00000269138 DSTQ03001 7570 aaKnown RBP4.34□□□□□ -1.72
SS18-202ENST00000269138 A0A0A0MQY5 61 aa4.23□□□□□ -1.73
SS18-202ENST00000269138 PMAIP1Q13794 54 aa4.23□□□□□ -1.73
SS18-202ENST00000269138 LCE3CQ5T5A8 94 aa4.22□□□□□ -1.73
SS18-202ENST00000269138 GPR98Q8WXG9 6306 aa4.12□□□□□ -1.75
SS18-202ENST00000269138 PRO0628Q9UI54 55 aa4.12□□□□□ -1.75
SS18-202ENST00000269138 KRTAP5-4Q6L8H1 288 aa4.11□□□□□ -1.75
SS18-202ENST00000269138 MT4P47944 62 aa4.08□□□□□ -1.76
SS18-202ENST00000269138 KRTAP5-5Q701N2 237 aaPredicted RBP4.08□□□□□ -1.76
SS18-202ENST00000269138 PRAC1Q96KF2 57 aa4.07□□□□□ -1.76
SS18-202ENST00000269138 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
SS18-202ENST00000269138 HMCN1Q96RW7 5635 aa3.97□□□□□ -1.77
SS18-202ENST00000269138 KRTAP5-3Q6L8H2 238 aa3.91□□□□□ -1.78
SS18-202ENST00000269138 KRTAP12-4P60329 112 aa3.89□□□□□ -1.79
SS18-202ENST00000269138 KTN1-AS1Q86SY8 53 aa3.89□□□□□ -1.79
SS18-202ENST00000269138 MT1AP04731 61 aa3.87□□□□□ -1.79
SS18-202ENST00000269138 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
SS18-202ENST00000269138 KRTAP6-1Q3LI64 71 aa3.86□□□□□ -1.79
SS18-202ENST00000269138 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
SS18-202ENST00000269138 SPRR5A0A1B0GTR4 108 aa3.85□□□□□ -1.79
SS18-202ENST00000269138 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
SS18-202ENST00000269138 KRTAP5-10Q6L8G5 202 aa3.65□□□□□ -1.82
SS18-202ENST00000269138 KRTAP5-2Q701N4 177 aa3.65□□□□□ -1.82
SS18-202ENST00000269138 KRTAP6-2Q3LI66 62 aa3.64□□□□□ -1.83
SS18-202ENST00000269138 MT3P25713 68 aa3.52□□□□□ -1.85
SS18-202ENST00000269138 KRTAP5-7Q6L8G8 165 aa3.46□□□□□ -1.86
SS18-202ENST00000269138 KRTAP5-8O75690 187 aa3.34□□□□□ -1.87
SS18-202ENST00000269138 LUZP6Q538Z0 58 aa3.32□□□□□ -1.88
SS18-202ENST00000269138 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
SS18-202ENST00000269138 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
SS18-202ENST00000269138 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
SS18-202ENST00000269138 AHNAKQ09666 5890 aaKnown RBP3.13□□□□□ -1.91
SS18-202ENST00000269138 MUC5ACP98088 5654 aa3.12□□□□□ -1.91
SS18-202ENST00000269138 LCE3DQ9BYE3 92 aa3.09□□□□□ -1.91
SS18-202ENST00000269138 MUC5BQ9HC84 5762 aaPredicted RBP3.09□□□□□ -1.92
SS18-202ENST00000269138 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
SS18-202ENST00000269138 KRTAP5-11Q6L8G4 156 aa2.97□□□□□ -1.93
SS18-202ENST00000269138 NDUFAF8A1L188 74 aa2.95□□□□□ -1.94
SS18-202ENST00000269138 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
SS18-202ENST00000269138 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
SS18-202ENST00000269138 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
SS18-202ENST00000269138 INE1O15225 51 aa2.56□□□□□ -2
SS18-202ENST00000269138 LCE1FQ5T754 118 aa2.55□□□□□ -2
SS18-202ENST00000269138 KRTAP21-2Q3LI59 83 aa2.53□□□□□ -2
SS18-202ENST00000269138 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
SS18-202ENST00000269138 PRM1P04553 51 aa2.37□□□□□ -2.03
SS18-202ENST00000269138 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
SS18-202ENST00000269138 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
SS18-202ENST00000269138 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
SS18-202ENST00000269138 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 97.8 ms