RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
VPS33A-201ENST00000267199 LCE3DQ9BYE3 92 aa3.69□□□□□ -1.82
VPS33A-201ENST00000267199 KRTAP4-3Q9BYR4 195 aa3.67□□□□□ -1.82
VPS33A-201ENST00000267199 SPRR2EP22531 72 aa3.66□□□□□ -1.82
VPS33A-201ENST00000267199 SPRR2BP35325 72 aa3.66□□□□□ -1.82
VPS33A-201ENST00000267199 SPRR2AP35326 72 aa3.66□□□□□ -1.82
VPS33A-201ENST00000267199 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
VPS33A-201ENST00000267199 MT1MQ8N339 61 aa3.63□□□□□ -1.83
VPS33A-201ENST00000267199 KRTAP19-6Q3LI70 58 aa3.63□□□□□ -1.83
VPS33A-201ENST00000267199 KRTAP9-6A8MVA2 160 aa3.61□□□□□ -1.83
VPS33A-201ENST00000267199 FCGBPQ9Y6R7 5405 aaPredicted RBP3.61□□□□□ -1.83
VPS33A-201ENST00000267199 KRTAP9-2Q9BYQ4 174 aa3.58□□□□□ -1.84
VPS33A-201ENST00000267199 DSTQ03001 7570 aaKnown RBP3.57□□□□□ -1.84
VPS33A-201ENST00000267199 KRTAP2-3P0C7H8 128 aa3.57□□□□□ -1.84
VPS33A-201ENST00000267199 KRTAP2-4Q9BYR9 128 aa3.57□□□□□ -1.84
VPS33A-201ENST00000267199 KRTAP2-1Q9BYU5 128 aa3.57□□□□□ -1.84
VPS33A-201ENST00000267199 USH2AO75445 5202 aa3.57□□□□□ -1.84
VPS33A-201ENST00000267199 KMT2DO14686 5537 aa3.53□□□□□ -1.84
VPS33A-201ENST00000267199 PRM1P04553 51 aa3.53□□□□□ -1.84
VPS33A-201ENST00000267199 KRTAP4-9Q9BYQ8 210 aa3.52□□□□□ -1.85
VPS33A-201ENST00000267199 SPRR2DP22532 72 aa3.51□□□□□ -1.85
VPS33A-201ENST00000267199 KRTAP9-6A0A140TA67 174 aa3.47□□□□□ -1.85
VPS33A-201ENST00000267199 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
VPS33A-201ENST00000267199 LCE2DQ5TA82 110 aaPredicted RBP3.33□□□□□ -1.88
VPS33A-201ENST00000267199 MT1AP04731 61 aa3.32□□□□□ -1.88
VPS33A-201ENST00000267199 MT3P25713 68 aa3.29□□□□□ -1.88
VPS33A-201ENST00000267199 MUC12Q9UKN1 5478 aa3.28□□□□□ -1.88
VPS33A-201ENST00000267199 LCE5AQ5TCM9 118 aa3.27□□□□□ -1.89
VPS33A-201ENST00000267199 KRTAP6-1Q3LI64 71 aa3.25□□□□□ -1.89
VPS33A-201ENST00000267199 KRTAP9-7A8MTY7 169 aa3.23□□□□□ -1.89
VPS33A-201ENST00000267199 SSPOA2VEC9 5147 aa3.23□□□□□ -1.89
VPS33A-201ENST00000267199 MT4P47944 62 aa3.17□□□□□ -1.9
VPS33A-201ENST00000267199 KRTAP6-2Q3LI66 62 aa3.16□□□□□ -1.9
VPS33A-201ENST00000267199 LCE1AQ5T7P2 110 aa3.14□□□□□ -1.91
VPS33A-201ENST00000267199 MACF1Q9UPN3 7388 aaKnown RBP3.12□□□□□ -1.91
VPS33A-201ENST00000267199 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.1□□□□□ -1.91
VPS33A-201ENST00000267199 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
VPS33A-201ENST00000267199 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
VPS33A-201ENST00000267199 KRTAP9-4Q9BYQ2 154 aa3.05□□□□□ -1.92
VPS33A-201ENST00000267199 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
VPS33A-201ENST00000267199 KRTAP6-3Q3LI67 103 aa2.96□□□□□ -1.94
VPS33A-201ENST00000267199 KRTAP20-1Q3LI63 56 aa2.89□□□□□ -1.95
VPS33A-201ENST00000267199 KRTAP2-2Q9BYT5 123 aa2.87□□□□□ -1.95
VPS33A-201ENST00000267199 KRTAP5-9P26371 169 aa2.84□□□□□ -1.95
VPS33A-201ENST00000267199 MDN1Q9NU22 5596 aa2.84□□□□□ -1.96
VPS33A-201ENST00000267199 LCE4AQ5TA78 99 aa2.78□□□□□ -1.97
VPS33A-201ENST00000267199 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
VPS33A-201ENST00000267199 NEBP20929 6669 aa2.73□□□□□ -1.97
VPS33A-201ENST00000267199 GPR98Q8WXG9 6306 aa2.69□□□□□ -1.98
VPS33A-201ENST00000267199 KRTAP4-6Q9BYQ5 205 aa2.67□□□□□ -1.98
VPS33A-201ENST00000267199 KRTAP4-11Q9BYQ6 195 aa2.66□□□□□ -1.98
VPS33A-201ENST00000267199 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
VPS33A-201ENST00000267199 LCE1EQ5T753 118 aa2.54□□□□□ -2
VPS33A-201ENST00000267199 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
VPS33A-201ENST00000267199 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
VPS33A-201ENST00000267199 MUC5ACP98088 5654 aa2.4□□□□□ -2.03
VPS33A-201ENST00000267199 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
VPS33A-201ENST00000267199 KRTAP5-4Q6L8H1 288 aa2.34□□□□□ -2.04
VPS33A-201ENST00000267199 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
VPS33A-201ENST00000267199 KRTAP9-9Q9BYP9 154 aa2.21□□□□□ -2.06
VPS33A-201ENST00000267199 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
VPS33A-201ENST00000267199 KRTAP4-2Q9BYR5 136 aa2.19□□□□□ -2.06
VPS33A-201ENST00000267199 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
VPS33A-201ENST00000267199 KRTAP5-10Q6L8G5 202 aa2.09□□□□□ -2.08
VPS33A-201ENST00000267199 KRTAP5-3Q6L8H2 238 aa2.07□□□□□ -2.08
VPS33A-201ENST00000267199 AHNAK2Q8IVF2 5795 aa2.05□□□□□ -2.08
VPS33A-201ENST00000267199 KRTAP5-8O75690 187 aa1.91□□□□□ -2.1
VPS33A-201ENST00000267199 KRTAP5-1Q6L8H4 278 aa1.86□□□□□ -2.11
VPS33A-201ENST00000267199 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
VPS33A-201ENST00000267199 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
VPS33A-201ENST00000267199 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.12
VPS33A-201ENST00000267199 AHNAKQ09666 5890 aaKnown RBP1.77□□□□□ -2.13
VPS33A-201ENST00000267199 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
VPS33A-201ENST00000267199 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
VPS33A-201ENST00000267199 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
VPS33A-201ENST00000267199 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
VPS33A-201ENST00000267199 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 214.8 ms