RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 SPRR2DP22532 72 aa4.01□□□□□ -1.77
CLSTN3-201ENST00000266546 USH2AO75445 5202 aa3.93□□□□□ -1.78
CLSTN3-201ENST00000266546 MT1EP04732 61 aa3.92□□□□□ -1.78
CLSTN3-201ENST00000266546 MT1GP13640 62 aa3.91□□□□□ -1.78
CLSTN3-201ENST00000266546 KRTAP12-4P60329 112 aa3.9□□□□□ -1.79
CLSTN3-201ENST00000266546 SYNE2Q8WXH0 6885 aaKnown RBP3.89□□□□□ -1.79
CLSTN3-201ENST00000266546 KRTAP19-7Q3SYF9 63 aa3.88□□□□□ -1.79
CLSTN3-201ENST00000266546 MT1LQ93083 61 aa3.88□□□□□ -1.79
CLSTN3-201ENST00000266546 KRTAP4-7Q9BYR0 210 aa3.88□□□□□ -1.79
CLSTN3-201ENST00000266546 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
CLSTN3-201ENST00000266546 KRTAP19-3Q7Z4W3 81 aa3.84□□□□□ -1.79
CLSTN3-201ENST00000266546 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.84□□□□□ -1.8
CLSTN3-201ENST00000266546 MACF1Q9UPN3 7388 aaKnown RBP3.83□□□□□ -1.8
CLSTN3-201ENST00000266546 LCE3BQ5TA77 95 aa3.76□□□□□ -1.81
CLSTN3-201ENST00000266546 KMT2DO14686 5537 aa3.73□□□□□ -1.81
CLSTN3-201ENST00000266546 KRTAP20-1Q3LI63 56 aa3.72□□□□□ -1.81
CLSTN3-201ENST00000266546 MT1MQ8N339 61 aa3.72□□□□□ -1.81
CLSTN3-201ENST00000266546 SSPOA2VEC9 5147 aa3.7□□□□□ -1.82
CLSTN3-201ENST00000266546 KRTAP2-3P0C7H8 128 aa3.69□□□□□ -1.82
CLSTN3-201ENST00000266546 KRTAP2-4Q9BYR9 128 aa3.69□□□□□ -1.82
CLSTN3-201ENST00000266546 KRTAP2-1Q9BYU5 128 aa3.69□□□□□ -1.82
CLSTN3-201ENST00000266546 KRTAP9-6A8MVA2 160 aa3.66□□□□□ -1.82
CLSTN3-201ENST00000266546 KRTAP4-3Q9BYR4 195 aa3.66□□□□□ -1.82
CLSTN3-201ENST00000266546 MT4P47944 62 aa3.64□□□□□ -1.83
CLSTN3-201ENST00000266546 KRTAP6-3Q3LI67 103 aa3.64□□□□□ -1.83
CLSTN3-201ENST00000266546 FCGBPQ9Y6R7 5405 aaPredicted RBP3.63□□□□□ -1.83
CLSTN3-201ENST00000266546 LOC100996750A0A140TA64 210 aa3.61□□□□□ -1.83
CLSTN3-201ENST00000266546 LCE1AQ5T7P2 110 aa3.61□□□□□ -1.83
CLSTN3-201ENST00000266546 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
CLSTN3-201ENST00000266546 LCE5AQ5TCM9 118 aa3.6□□□□□ -1.83
CLSTN3-201ENST00000266546 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
CLSTN3-201ENST00000266546 KRTAP5-9P26371 169 aa3.55□□□□□ -1.84
CLSTN3-201ENST00000266546 MUC12Q9UKN1 5478 aa3.47□□□□□ -1.85
CLSTN3-201ENST00000266546 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
CLSTN3-201ENST00000266546 PRM1P04553 51 aa3.43□□□□□ -1.86
CLSTN3-201ENST00000266546 MDN1Q9NU22 5596 aa3.43□□□□□ -1.86
CLSTN3-201ENST00000266546 NEBP20929 6669 aa3.41□□□□□ -1.86
CLSTN3-201ENST00000266546 MT1AP04731 61 aa3.39□□□□□ -1.87
CLSTN3-201ENST00000266546 KRTAP4-9Q9BYQ8 210 aa3.38□□□□□ -1.87
CLSTN3-201ENST00000266546 KRTAP2-2Q9BYT5 123 aa3.35□□□□□ -1.87
CLSTN3-201ENST00000266546 MT3P25713 68 aa3.31□□□□□ -1.88
CLSTN3-201ENST00000266546 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
CLSTN3-201ENST00000266546 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
CLSTN3-201ENST00000266546 KRTAP6-1Q3LI64 71 aa3.23□□□□□ -1.89
CLSTN3-201ENST00000266546 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
CLSTN3-201ENST00000266546 KRTAP9-4Q9BYQ2 154 aa3.17□□□□□ -1.9
CLSTN3-201ENST00000266546 KRTAP6-2Q3LI66 62 aa3.11□□□□□ -1.91
CLSTN3-201ENST00000266546 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.91
CLSTN3-201ENST00000266546 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
CLSTN3-201ENST00000266546 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
CLSTN3-201ENST00000266546 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
CLSTN3-201ENST00000266546 LCE1EQ5T753 118 aa2.87□□□□□ -1.95
CLSTN3-201ENST00000266546 KRTAP4-6Q9BYQ5 205 aa2.86□□□□□ -1.95
CLSTN3-201ENST00000266546 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
CLSTN3-201ENST00000266546 LCE1FQ5T754 118 aa2.81□□□□□ -1.96
CLSTN3-201ENST00000266546 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
CLSTN3-201ENST00000266546 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
CLSTN3-201ENST00000266546 MUC5ACP98088 5654 aa2.61□□□□□ -1.99
CLSTN3-201ENST00000266546 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
CLSTN3-201ENST00000266546 HMCN1Q96RW7 5635 aa2.59□□□□□ -1.99
CLSTN3-201ENST00000266546 KRTAP4-11Q9BYQ6 195 aa2.55□□□□□ -2
CLSTN3-201ENST00000266546 AHNAK2Q8IVF2 5795 aa2.53□□□□□ -2
CLSTN3-201ENST00000266546 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
CLSTN3-201ENST00000266546 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
CLSTN3-201ENST00000266546 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
CLSTN3-201ENST00000266546 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
CLSTN3-201ENST00000266546 KRTAP5-10Q6L8G5 202 aa2.31□□□□□ -2.04
CLSTN3-201ENST00000266546 KRTAP4-4Q9BYR3 166 aa2.31□□□□□ -2.04
CLSTN3-201ENST00000266546 KRTAP5-8O75690 187 aa2.28□□□□□ -2.05
CLSTN3-201ENST00000266546 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
CLSTN3-201ENST00000266546 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
CLSTN3-201ENST00000266546 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
CLSTN3-201ENST00000266546 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
CLSTN3-201ENST00000266546 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
CLSTN3-201ENST00000266546 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
CLSTN3-201ENST00000266546 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CLSTN3-201ENST00000266546 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 120.2 ms