RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 KRTAP2-3P0C7H8 128 aa4.17□□□□□ -1.74
CHMP3-201ENST00000263856 KRTAP2-4Q9BYR9 128 aa4.17□□□□□ -1.74
CHMP3-201ENST00000263856 KRTAP2-1Q9BYU5 128 aa4.17□□□□□ -1.74
CHMP3-201ENST00000263856 KRTAP4-3Q9BYR4 195 aa4.17□□□□□ -1.74
CHMP3-201ENST00000263856 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.75
CHMP3-201ENST00000263856 MT1GP13640 62 aa4.1□□□□□ -1.75
CHMP3-201ENST00000263856 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
CHMP3-201ENST00000263856 KRTAP19-4Q3LI73 84 aa3.93□□□□□ -1.78
CHMP3-201ENST00000263856 MT1MQ8N339 61 aa3.93□□□□□ -1.78
CHMP3-201ENST00000263856 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
CHMP3-201ENST00000263856 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
CHMP3-201ENST00000263856 KRTAP19-3Q7Z4W3 81 aa3.9□□□□□ -1.78
CHMP3-201ENST00000263856 LCE3BQ5TA77 95 aa3.88□□□□□ -1.79
CHMP3-201ENST00000263856 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
CHMP3-201ENST00000263856 SPRR2FQ96RM1 72 aa3.87□□□□□ -1.79
CHMP3-201ENST00000263856 KRTAP4-9Q9BYQ8 210 aa3.84□□□□□ -1.79
CHMP3-201ENST00000263856 SYNE2Q8WXH0 6885 aaKnown RBP3.84□□□□□ -1.8
CHMP3-201ENST00000263856 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
CHMP3-201ENST00000263856 MDN1Q9NU22 5596 aa3.72□□□□□ -1.81
CHMP3-201ENST00000263856 LCE5AQ5TCM9 118 aa3.69□□□□□ -1.82
CHMP3-201ENST00000263856 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.83
CHMP3-201ENST00000263856 LCE3DQ9BYE3 92 aa3.58□□□□□ -1.84
CHMP3-201ENST00000263856 KRTAP9-2Q9BYQ4 174 aa3.55□□□□□ -1.84
CHMP3-201ENST00000263856 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
CHMP3-201ENST00000263856 LCE3EQ5T5B0 92 aa3.52□□□□□ -1.85
CHMP3-201ENST00000263856 PRM1P04553 51 aa3.51□□□□□ -1.85
CHMP3-201ENST00000263856 MT1AP04731 61 aa3.49□□□□□ -1.85
CHMP3-201ENST00000263856 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
CHMP3-201ENST00000263856 SPRR2EP22531 72 aa3.45□□□□□ -1.86
CHMP3-201ENST00000263856 SPRR2BP35325 72 aa3.45□□□□□ -1.86
CHMP3-201ENST00000263856 SPRR2AP35326 72 aa3.45□□□□□ -1.86
CHMP3-201ENST00000263856 LCE1AQ5T7P2 110 aa3.43□□□□□ -1.86
CHMP3-201ENST00000263856 KRTAP5-5Q701N2 237 aaPredicted RBP3.41□□□□□ -1.86
CHMP3-201ENST00000263856 KRTAP6-2Q3LI66 62 aa3.33□□□□□ -1.88
CHMP3-201ENST00000263856 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
CHMP3-201ENST00000263856 SPRR2DP22532 72 aa3.27□□□□□ -1.89
CHMP3-201ENST00000263856 KRTAP9-6A0A140TA67 174 aa3.25□□□□□ -1.89
CHMP3-201ENST00000263856 KRTAP5-9P26371 169 aa3.24□□□□□ -1.89
CHMP3-201ENST00000263856 MT3P25713 68 aa3.18□□□□□ -1.9
CHMP3-201ENST00000263856 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.14□□□□□ -1.91
CHMP3-201ENST00000263856 KRTAP6-3Q3LI67 103 aa3.08□□□□□ -1.92
CHMP3-201ENST00000263856 MT4P47944 62 aa3.02□□□□□ -1.93
CHMP3-201ENST00000263856 KRTAP2-2Q9BYT5 123 aa3□□□□□ -1.93
CHMP3-201ENST00000263856 NEBP20929 6669 aa2.95□□□□□ -1.94
CHMP3-201ENST00000263856 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
CHMP3-201ENST00000263856 KRTAP9-9Q9BYP9 154 aa2.85□□□□□ -1.95
CHMP3-201ENST00000263856 LCE1DQ5T752 114 aa2.83□□□□□ -1.96
CHMP3-201ENST00000263856 KRTAP5-4Q6L8H1 288 aa2.8□□□□□ -1.96
CHMP3-201ENST00000263856 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
CHMP3-201ENST00000263856 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
CHMP3-201ENST00000263856 KRTAP20-2Q3LI61 65 aa2.77□□□□□ -1.97
CHMP3-201ENST00000263856 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
CHMP3-201ENST00000263856 KRTAP4-11Q9BYQ6 195 aa2.69□□□□□ -1.98
CHMP3-201ENST00000263856 KRTAP4-2Q9BYR5 136 aa2.67□□□□□ -1.98
CHMP3-201ENST00000263856 LCE4AQ5TA78 99 aa2.64□□□□□ -1.99
CHMP3-201ENST00000263856 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
CHMP3-201ENST00000263856 KRTAP20-1Q3LI63 56 aa2.6□□□□□ -1.99
CHMP3-201ENST00000263856 LCE1EQ5T753 118 aa2.58□□□□□ -2
CHMP3-201ENST00000263856 KRTAP5-3Q6L8H2 238 aa2.54□□□□□ -2
CHMP3-201ENST00000263856 KRTAP5-10Q6L8G5 202 aa2.52□□□□□ -2.01
CHMP3-201ENST00000263856 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
CHMP3-201ENST00000263856 KRTAP5-1Q6L8H4 278 aa2.37□□□□□ -2.03
CHMP3-201ENST00000263856 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.04
CHMP3-201ENST00000263856 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
CHMP3-201ENST00000263856 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
CHMP3-201ENST00000263856 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
CHMP3-201ENST00000263856 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
CHMP3-201ENST00000263856 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
CHMP3-201ENST00000263856 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.1□□□□□ -2.07
CHMP3-201ENST00000263856 LCE1FQ5T754 118 aa2.09□□□□□ -2.07
CHMP3-201ENST00000263856 GPR98Q8WXG9 6306 aa2.08□□□□□ -2.08
CHMP3-201ENST00000263856 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
CHMP3-201ENST00000263856 KRTAP5-11Q6L8G4 156 aa1.96□□□□□ -2.1
CHMP3-201ENST00000263856 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
CHMP3-201ENST00000263856 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
CHMP3-201ENST00000263856 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
CHMP3-201ENST00000263856 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 94.2 ms