RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KRTAP19-3Q7Z4W3 81 aa3.52□□□□□ -1.85
CD44-201ENST00000263398 KRTAP4-7Q9BYR0 210 aa3.52□□□□□ -1.85
CD44-201ENST00000263398 SPRR2DP22532 72 aa3.52□□□□□ -1.85
CD44-201ENST00000263398 MT1EP04732 61 aa3.5□□□□□ -1.85
CD44-201ENST00000263398 LCE2AQ5TA79 106 aaPredicted RBP3.49□□□□□ -1.85
CD44-201ENST00000263398 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
CD44-201ENST00000263398 KMT2DO14686 5537 aa3.46□□□□□ -1.86
CD44-201ENST00000263398 MT1MQ8N339 61 aa3.37□□□□□ -1.87
CD44-201ENST00000263398 DSTQ03001 7570 aaKnown RBP3.35□□□□□ -1.87
CD44-201ENST00000263398 KRTAP19-6Q3LI70 58 aa3.35□□□□□ -1.87
CD44-201ENST00000263398 OBSCNQ5VST9 7968 aa3.34□□□□□ -1.88
CD44-201ENST00000263398 KRTAP4-3Q9BYR4 195 aa3.32□□□□□ -1.88
CD44-201ENST00000263398 FCGBPQ9Y6R7 5405 aaPredicted RBP3.3□□□□□ -1.88
CD44-201ENST00000263398 SYNE2Q8WXH0 6885 aaKnown RBP3.29□□□□□ -1.88
CD44-201ENST00000263398 LOC100996750A0A140TA64 210 aa3.29□□□□□ -1.88
CD44-201ENST00000263398 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
CD44-201ENST00000263398 MT3P25713 68 aa3.28□□□□□ -1.88
CD44-201ENST00000263398 KRTAP9-2Q9BYQ4 174 aa3.27□□□□□ -1.89
CD44-201ENST00000263398 PRM1P04553 51 aa3.2□□□□□ -1.9
CD44-201ENST00000263398 KRTAP2-3P0C7H8 128 aa3.18□□□□□ -1.9
CD44-201ENST00000263398 KRTAP2-4Q9BYR9 128 aa3.18□□□□□ -1.9
CD44-201ENST00000263398 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
CD44-201ENST00000263398 SSPOA2VEC9 5147 aa3.18□□□□□ -1.9
CD44-201ENST00000263398 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
CD44-201ENST00000263398 MT1AP04731 61 aa3.15□□□□□ -1.9
CD44-201ENST00000263398 KRTAP9-6A8MVA2 160 aa3.13□□□□□ -1.91
CD44-201ENST00000263398 MACF1Q9UPN3 7388 aaKnown RBP3.13□□□□□ -1.91
CD44-201ENST00000263398 MT4P47944 62 aa3.11□□□□□ -1.91
CD44-201ENST00000263398 KRTAP4-9Q9BYQ8 210 aa3.05□□□□□ -1.92
CD44-201ENST00000263398 KRTAP9-6A0A140TA67 174 aa3.03□□□□□ -1.92
CD44-201ENST00000263398 LCE1DQ5T752 114 aa3.03□□□□□ -1.92
CD44-201ENST00000263398 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
CD44-201ENST00000263398 LCE1AQ5T7P2 110 aa2.98□□□□□ -1.93
CD44-201ENST00000263398 LCE5AQ5TCM9 118 aa2.95□□□□□ -1.94
CD44-201ENST00000263398 KRTAP6-1Q3LI64 71 aa2.95□□□□□ -1.94
CD44-201ENST00000263398 KRTAP9-4Q9BYQ2 154 aa2.87□□□□□ -1.95
CD44-201ENST00000263398 KRTAP6-2Q3LI66 62 aa2.87□□□□□ -1.95
CD44-201ENST00000263398 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.86□□□□□ -1.95
CD44-201ENST00000263398 KRTAP6-3Q3LI67 103 aa2.85□□□□□ -1.95
CD44-201ENST00000263398 MDN1Q9NU22 5596 aa2.82□□□□□ -1.96
CD44-201ENST00000263398 KRTAP9-7A8MTY7 169 aa2.81□□□□□ -1.96
CD44-201ENST00000263398 LCE4AQ5TA78 99 aa2.76□□□□□ -1.97
CD44-201ENST00000263398 KRTAP20-1Q3LI63 56 aa2.75□□□□□ -1.97
CD44-201ENST00000263398 KRTAP2-2Q9BYT5 123 aa2.67□□□□□ -1.98
CD44-201ENST00000263398 KRTAP5-9P26371 169 aa2.64□□□□□ -1.99
CD44-201ENST00000263398 NEBP20929 6669 aa2.6□□□□□ -1.99
CD44-201ENST00000263398 MUC19Q7Z5P9 8384 aa2.58□□□□□ -2
CD44-201ENST00000263398 KRTAP4-6Q9BYQ5 205 aa2.52□□□□□ -2.01
CD44-201ENST00000263398 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
CD44-201ENST00000263398 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
CD44-201ENST00000263398 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
CD44-201ENST00000263398 GPR98Q8WXG9 6306 aa2.43□□□□□ -2.02
CD44-201ENST00000263398 KRTAP20-2Q3LI61 65 aa2.37□□□□□ -2.03
CD44-201ENST00000263398 KRTAP5-5Q701N2 237 aaPredicted RBP2.35□□□□□ -2.03
CD44-201ENST00000263398 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
CD44-201ENST00000263398 KRTAP9-9Q9BYP9 154 aa2.33□□□□□ -2.04
CD44-201ENST00000263398 MUC5ACP98088 5654 aa2.24□□□□□ -2.05
CD44-201ENST00000263398 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
CD44-201ENST00000263398 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
CD44-201ENST00000263398 KRTAP5-4Q6L8H1 288 aa2.17□□□□□ -2.06
CD44-201ENST00000263398 KRTAP4-4Q9BYR3 166 aa2.12□□□□□ -2.07
CD44-201ENST00000263398 KRTAP4-2Q9BYR5 136 aa2.07□□□□□ -2.08
CD44-201ENST00000263398 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
CD44-201ENST00000263398 KRTAP5-3Q6L8H2 238 aa1.94□□□□□ -2.1
CD44-201ENST00000263398 KRTAP5-2Q701N4 177 aa1.92□□□□□ -2.1
CD44-201ENST00000263398 KRTAP5-10Q6L8G5 202 aa1.85□□□□□ -2.11
CD44-201ENST00000263398 KRTAP5-8O75690 187 aa1.84□□□□□ -2.11
CD44-201ENST00000263398 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
CD44-201ENST00000263398 KRTAP5-1Q6L8H4 278 aa1.74□□□□□ -2.13
CD44-201ENST00000263398 KRTAP5-7Q6L8G8 165 aa1.73□□□□□ -2.13
CD44-201ENST00000263398 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
CD44-201ENST00000263398 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
CD44-201ENST00000263398 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
CD44-201ENST00000263398 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
CD44-201ENST00000263398 PHGR1C9JFL3 82 aa1.47□□□□□ -2.17
CD44-201ENST00000263398 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
CD44-201ENST00000263398 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 85.9 ms