RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MUC12Q9UKN1 5478 aa4.44□□□□□ -1.7
LIG1-201ENST00000263274 KRTAP9-6A0A140TA67 174 aa4.43□□□□□ -1.7
LIG1-201ENST00000263274 KRTAP19-7Q3SYF9 63 aa4.41□□□□□ -1.7
LIG1-201ENST00000263274 SYNE1Q8NF91 8797 aaKnown RBP4.35□□□□□ -1.71
LIG1-201ENST00000263274 KRTAP19-6Q3LI70 58 aa4.34□□□□□ -1.72
LIG1-201ENST00000263274 MT1LQ93083 61 aa4.31□□□□□ -1.72
LIG1-201ENST00000263274 MT1EP04732 61 aa4.29□□□□□ -1.72
LIG1-201ENST00000263274 KRTAP4-3Q9BYR4 195 aa4.25□□□□□ -1.73
LIG1-201ENST00000263274 LOC100996750A0A140TA64 210 aa4.24□□□□□ -1.73
LIG1-201ENST00000263274 KRTAP2-3P0C7H8 128 aa4.21□□□□□ -1.74
LIG1-201ENST00000263274 KRTAP2-4Q9BYR9 128 aa4.21□□□□□ -1.74
LIG1-201ENST00000263274 KRTAP2-1Q9BYU5 128 aa4.21□□□□□ -1.74
LIG1-201ENST00000263274 MT1GP13640 62 aa4.2□□□□□ -1.74
LIG1-201ENST00000263274 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.17□□□□□ -1.74
LIG1-201ENST00000263274 MDN1Q9NU22 5596 aa4.16□□□□□ -1.74
LIG1-201ENST00000263274 SPRR2FQ96RM1 72 aa4.15□□□□□ -1.74
LIG1-201ENST00000263274 KRTAP9-7A8MTY7 169 aa4.07□□□□□ -1.76
LIG1-201ENST00000263274 KRTAP19-4Q3LI73 84 aa4.06□□□□□ -1.76
LIG1-201ENST00000263274 MT1MQ8N339 61 aa4.03□□□□□ -1.76
LIG1-201ENST00000263274 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
LIG1-201ENST00000263274 KRTAP19-3Q7Z4W3 81 aa4.02□□□□□ -1.77
LIG1-201ENST00000263274 LCE3BQ5TA77 95 aa3.96□□□□□ -1.78
LIG1-201ENST00000263274 SPRR2EP22531 72 aa3.94□□□□□ -1.78
LIG1-201ENST00000263274 SPRR2BP35325 72 aa3.94□□□□□ -1.78
LIG1-201ENST00000263274 SPRR2AP35326 72 aa3.94□□□□□ -1.78
LIG1-201ENST00000263274 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.79
LIG1-201ENST00000263274 KRTAP6-3Q3LI67 103 aa3.88□□□□□ -1.79
LIG1-201ENST00000263274 LCE1AQ5T7P2 110 aa3.86□□□□□ -1.79
LIG1-201ENST00000263274 KRTAP2-2Q9BYT5 123 aa3.84□□□□□ -1.79
LIG1-201ENST00000263274 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
LIG1-201ENST00000263274 LCE5AQ5TCM9 118 aa3.79□□□□□ -1.8
LIG1-201ENST00000263274 KRTAP5-9P26371 169 aa3.79□□□□□ -1.8
LIG1-201ENST00000263274 SPRR2DP22532 72 aa3.77□□□□□ -1.81
LIG1-201ENST00000263274 NEBP20929 6669 aa3.76□□□□□ -1.81
LIG1-201ENST00000263274 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
LIG1-201ENST00000263274 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
LIG1-201ENST00000263274 PRM1P04553 51 aa3.62□□□□□ -1.83
LIG1-201ENST00000263274 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
LIG1-201ENST00000263274 LCE1DQ5T752 114 aa3.59□□□□□ -1.83
LIG1-201ENST00000263274 MT1AP04731 61 aa3.59□□□□□ -1.84
LIG1-201ENST00000263274 KRTAP20-1Q3LI63 56 aa3.56□□□□□ -1.84
LIG1-201ENST00000263274 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
LIG1-201ENST00000263274 MT4P47944 62 aa3.44□□□□□ -1.86
LIG1-201ENST00000263274 KRTAP5-5Q701N2 237 aaPredicted RBP3.42□□□□□ -1.86
LIG1-201ENST00000263274 KRTAP9-4Q9BYQ2 154 aa3.37□□□□□ -1.87
LIG1-201ENST00000263274 KRTAP6-2Q3LI66 62 aa3.37□□□□□ -1.87
LIG1-201ENST00000263274 MT3P25713 68 aa3.29□□□□□ -1.88
LIG1-201ENST00000263274 KRTAP4-6Q9BYQ5 205 aa3.27□□□□□ -1.89
LIG1-201ENST00000263274 HMCN1Q96RW7 5635 aa3.26□□□□□ -1.89
LIG1-201ENST00000263274 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
LIG1-201ENST00000263274 LCE4AQ5TA78 99 aa3.12□□□□□ -1.91
LIG1-201ENST00000263274 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
LIG1-201ENST00000263274 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
LIG1-201ENST00000263274 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
LIG1-201ENST00000263274 LCE1BQ5T7P3 118 aa2.87□□□□□ -1.95
LIG1-201ENST00000263274 MUC5ACP98088 5654 aa2.84□□□□□ -1.95
LIG1-201ENST00000263274 AHNAK2Q8IVF2 5795 aa2.84□□□□□ -1.95
LIG1-201ENST00000263274 KRTAP5-3Q6L8H2 238 aa2.83□□□□□ -1.96
LIG1-201ENST00000263274 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
LIG1-201ENST00000263274 KRTAP5-2Q701N4 177 aa2.72□□□□□ -1.97
LIG1-201ENST00000263274 KRTAP9-9Q9BYP9 154 aa2.69□□□□□ -1.98
LIG1-201ENST00000263274 KRTAP5-10Q6L8G5 202 aa2.65□□□□□ -1.99
LIG1-201ENST00000263274 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
LIG1-201ENST00000263274 KRTAP5-8O75690 187 aa2.57□□□□□ -2
LIG1-201ENST00000263274 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
LIG1-201ENST00000263274 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
LIG1-201ENST00000263274 KRTAP4-4Q9BYR3 166 aa2.45□□□□□ -2.02
LIG1-201ENST00000263274 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
LIG1-201ENST00000263274 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
LIG1-201ENST00000263274 KRTAP4-12Q9BQ66 201 aa2.37□□□□□ -2.03
LIG1-201ENST00000263274 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
LIG1-201ENST00000263274 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
LIG1-201ENST00000263274 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
LIG1-201ENST00000263274 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
LIG1-201ENST00000263274 KRTAP5-11Q6L8G4 156 aa2.02□□□□□ -2.09
LIG1-201ENST00000263274 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
LIG1-201ENST00000263274 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 165 ms