RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 KRTAP9-6A8MVA2 160 aa2.44□□□□□ -2.02
TOPBP1-201ENST00000260810 KRTAP19-4Q3LI73 84 aa2.42□□□□□ -2.02
TOPBP1-201ENST00000260810 KRTAP9-7A8MTY7 169 aa2.42□□□□□ -2.02
TOPBP1-201ENST00000260810 KRTAP4-9Q9BYQ8 210 aa2.4□□□□□ -2.02
TOPBP1-201ENST00000260810 KRTAP12-2P59991 146 aa2.39□□□□□ -2.03
TOPBP1-201ENST00000260810 KRTAP19-6Q3LI70 58 aa2.39□□□□□ -2.03
TOPBP1-201ENST00000260810 SYNE1Q8NF91 8797 aaKnown RBP2.39□□□□□ -2.03
TOPBP1-201ENST00000260810 LCE1DQ5T752 114 aa2.39□□□□□ -2.03
TOPBP1-201ENST00000260810 INE1O15225 51 aa2.38□□□□□ -2.03
TOPBP1-201ENST00000260810 KRTAP10-12P60413 245 aa2.35□□□□□ -2.03
TOPBP1-201ENST00000260810 KRTAP12-1P59990 96 aa2.34□□□□□ -2.03
TOPBP1-201ENST00000260810 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
TOPBP1-201ENST00000260810 KRTAP4-11Q9BYQ6 195 aa2.33□□□□□ -2.04
TOPBP1-201ENST00000260810 KRTAP5-9P26371 169 aa2.3□□□□□ -2.04
TOPBP1-201ENST00000260810 KRTAP4-3Q9BYR4 195 aa2.3□□□□□ -2.04
TOPBP1-201ENST00000260810 KRTAP15-1Q3LI76 137 aa2.29□□□□□ -2.04
TOPBP1-201ENST00000260810 KRTAP5-5Q701N2 237 aaPredicted RBP2.22□□□□□ -2.05
TOPBP1-201ENST00000260810 KRTAP5-3Q6L8H2 238 aa2.22□□□□□ -2.05
TOPBP1-201ENST00000260810 NEBP20929 6669 aa2.21□□□□□ -2.06
TOPBP1-201ENST00000260810 LCE5AQ5TCM9 118 aa2.21□□□□□ -2.06
TOPBP1-201ENST00000260810 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
TOPBP1-201ENST00000260810 LCE1AQ5T7P2 110 aa2.15□□□□□ -2.06
TOPBP1-201ENST00000260810 MT1EP04732 61 aa2.14□□□□□ -2.07
TOPBP1-201ENST00000260810 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
TOPBP1-201ENST00000260810 KRTAP8-1Q8IUC2 63 aa2.1□□□□□ -2.07
TOPBP1-201ENST00000260810 MT1LQ93083 61 aa2.08□□□□□ -2.08
TOPBP1-201ENST00000260810 KRTAP19-5Q3LI72 72 aa2.08□□□□□ -2.08
TOPBP1-201ENST00000260810 LCE3AQ5TA76 89 aa2.06□□□□□ -2.08
TOPBP1-201ENST00000260810 SPRR5A0A1B0GTR4 108 aa2.03□□□□□ -2.08
TOPBP1-201ENST00000260810 KRTAP5-4Q6L8H1 288 aa2.02□□□□□ -2.09
TOPBP1-201ENST00000260810 MT1MQ8N339 61 aa1.96□□□□□ -2.1
TOPBP1-201ENST00000260810 SPRR2FQ96RM1 72 aa1.92□□□□□ -2.1
TOPBP1-201ENST00000260810 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
TOPBP1-201ENST00000260810 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
TOPBP1-201ENST00000260810 KRTAP6-3Q3LI67 103 aa1.9□□□□□ -2.1
TOPBP1-201ENST00000260810 LCE3CQ5T5A8 94 aa1.89□□□□□ -2.11
TOPBP1-201ENST00000260810 SPRR2EP22531 72 aa1.89□□□□□ -2.11
TOPBP1-201ENST00000260810 SPRR2BP35325 72 aa1.89□□□□□ -2.11
TOPBP1-201ENST00000260810 SPRR2AP35326 72 aa1.89□□□□□ -2.11
TOPBP1-201ENST00000260810 KRTAP19-3Q7Z4W3 81 aa1.88□□□□□ -2.11
TOPBP1-201ENST00000260810 KRTAP6-1Q3LI64 71 aa1.87□□□□□ -2.11
TOPBP1-201ENST00000260810 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
TOPBP1-201ENST00000260810 AHNAK2Q8IVF2 5795 aa1.85□□□□□ -2.11
TOPBP1-201ENST00000260810 KRTAP12-4P60329 112 aa1.85□□□□□ -2.11
TOPBP1-201ENST00000260810 MT1GP13640 62 aa1.84□□□□□ -2.12
TOPBP1-201ENST00000260810 KRTAP2-3P0C7H8 128 aa1.83□□□□□ -2.12
TOPBP1-201ENST00000260810 KRTAP2-4Q9BYR9 128 aa1.83□□□□□ -2.12
TOPBP1-201ENST00000260810 KRTAP2-1Q9BYU5 128 aa1.83□□□□□ -2.12
TOPBP1-201ENST00000260810 SPRR2DP22532 72 aa1.83□□□□□ -2.12
TOPBP1-201ENST00000260810 KRTAP20-1Q3LI63 56 aa1.82□□□□□ -2.12
TOPBP1-201ENST00000260810 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
TOPBP1-201ENST00000260810 MT3P25713 68 aa1.72□□□□□ -2.13
TOPBP1-201ENST00000260810 KRTAP5-1Q6L8H4 278 aa1.7□□□□□ -2.14
TOPBP1-201ENST00000260810 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
TOPBP1-201ENST00000260810 KRTAP2-2Q9BYT5 123 aa1.7□□□□□ -2.14
TOPBP1-201ENST00000260810 KRTAP20-2Q3LI61 65 aa1.67□□□□□ -2.14
TOPBP1-201ENST00000260810 LCE3EQ5T5B0 92 aa1.66□□□□□ -2.14
TOPBP1-201ENST00000260810 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.14
TOPBP1-201ENST00000260810 LCE3DQ9BYE3 92 aa1.65□□□□□ -2.15
TOPBP1-201ENST00000260810 KRTAP5-8O75690 187 aa1.61□□□□□ -2.15
TOPBP1-201ENST00000260810 MT4P47944 62 aa1.6□□□□□ -2.15
TOPBP1-201ENST00000260810 KRTAP6-2Q3LI66 62 aa1.59□□□□□ -2.16
TOPBP1-201ENST00000260810 MT1AP04731 61 aa1.56□□□□□ -2.16
TOPBP1-201ENST00000260810 KRTAP5-7Q6L8G8 165 aa1.55□□□□□ -2.16
TOPBP1-201ENST00000260810 KRTAP4-4Q9BYR3 166 aa1.48□□□□□ -2.17
TOPBP1-201ENST00000260810 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
TOPBP1-201ENST00000260810 GPR98Q8WXG9 6306 aa1.4□□□□□ -2.18
TOPBP1-201ENST00000260810 MUC19Q7Z5P9 8384 aa1.38□□□□□ -2.19
TOPBP1-201ENST00000260810 PRM1P04553 51 aa1.35□□□□□ -2.19
TOPBP1-201ENST00000260810 LCE1FQ5T754 118 aa1.34□□□□□ -2.2
TOPBP1-201ENST00000260810 LCE1BQ5T7P3 118 aa1.34□□□□□ -2.2
TOPBP1-201ENST00000260810 LCE1CQ5T751 118 aa1.3□□□□□ -2.2
TOPBP1-201ENST00000260810 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
TOPBP1-201ENST00000260810 LCE1EQ5T753 118 aa1.25□□□□□ -2.21
TOPBP1-201ENST00000260810 PHGR1C9JFL3 82 aa1.07□□□□□ -2.24
TOPBP1-201ENST00000260810 KRTAP21-1Q3LI58 79 aa0.84□□□□□ -2.28
TOPBP1-201ENST00000260810 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms