RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SPRR2BP35325 72 aa6.44□□□□□ -1.38
SDCBP-201ENST00000260130 SPRR2AP35326 72 aa6.44□□□□□ -1.38
SDCBP-201ENST00000260130 SPRR5A0A1B0GTR4 108 aa6.41□□□□□ -1.38
SDCBP-201ENST00000260130 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
SDCBP-201ENST00000260130 A0A0A0MQY5 61 aa6.32□□□□□ -1.4
SDCBP-201ENST00000260130 KRTAP20-1Q3LI63 56 aa6.31□□□□□ -1.4
SDCBP-201ENST00000260130 LCE3AQ5TA76 89 aa6.28□□□□□ -1.4
SDCBP-201ENST00000260130 KRTAP19-7Q3SYF9 63 aa6.27□□□□□ -1.41
SDCBP-201ENST00000260130 KRTAP2-3P0C7H8 128 aa6.23□□□□□ -1.41
SDCBP-201ENST00000260130 KRTAP2-4Q9BYR9 128 aa6.23□□□□□ -1.41
SDCBP-201ENST00000260130 SPRR2DP22532 72 aa6.22□□□□□ -1.41
SDCBP-201ENST00000260130 MT1EP04732 61 aa6.2□□□□□ -1.42
SDCBP-201ENST00000260130 KRTAP19-5Q3LI72 72 aa6.18□□□□□ -1.42
SDCBP-201ENST00000260130 KRTAP19-3Q7Z4W3 81 aa6.1□□□□□ -1.43
SDCBP-201ENST00000260130 LCE5AQ5TCM9 118 aa6.08□□□□□ -1.44
SDCBP-201ENST00000260130 KRTAP2-2Q9BYT5 123 aa6.04□□□□□ -1.44
SDCBP-201ENST00000260130 KRTAP2-1Q9BYU5 128 aa6.04□□□□□ -1.44
SDCBP-201ENST00000260130 LCE3BQ5TA77 95 aa6.03□□□□□ -1.44
SDCBP-201ENST00000260130 KRTAP12-3P60328 96 aa6.01□□□□□ -1.45
SDCBP-201ENST00000260130 MT1GP13640 62 aa6□□□□□ -1.45
SDCBP-201ENST00000260130 DSTQ03001 7570 aaKnown RBP5.97□□□□□ -1.45
SDCBP-201ENST00000260130 MT1LQ93083 61 aa5.97□□□□□ -1.45
SDCBP-201ENST00000260130 MT1MQ8N339 61 aa5.89□□□□□ -1.47
SDCBP-201ENST00000260130 INE1O15225 51 aa5.74□□□□□ -1.49
SDCBP-201ENST00000260130 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
SDCBP-201ENST00000260130 KRTAP4-7Q9BYR0 210 aa5.7□□□□□ -1.5
SDCBP-201ENST00000260130 LCE3CQ5T5A8 94 aa5.66□□□□□ -1.5
SDCBP-201ENST00000260130 KRTAP19-4Q3LI73 84 aa5.63□□□□□ -1.51
SDCBP-201ENST00000260130 KRTAP4-9Q9BYQ8 210 aa5.55□□□□□ -1.52
SDCBP-201ENST00000260130 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
SDCBP-201ENST00000260130 KRTAP5-4Q6L8H1 288 aa5.46□□□□□ -1.53
SDCBP-201ENST00000260130 LCE1DQ5T752 114 aa5.45□□□□□ -1.54
SDCBP-201ENST00000260130 MT4P47944 62 aa5.42□□□□□ -1.54
SDCBP-201ENST00000260130 HMCN1Q96RW7 5635 aa5.39□□□□□ -1.55
SDCBP-201ENST00000260130 KRTAP9-6A8MVA2 160 aa5.39□□□□□ -1.55
SDCBP-201ENST00000260130 LOC100996750A0A140TA64 210 aa5.38□□□□□ -1.55
SDCBP-201ENST00000260130 KRTAP5-5Q701N2 237 aaPredicted RBP5.37□□□□□ -1.55
SDCBP-201ENST00000260130 KRTAP4-6Q9BYQ5 205 aa5.36□□□□□ -1.55
SDCBP-201ENST00000260130 SYNE1Q8NF91 8797 aaKnown RBP5.22□□□□□ -1.57
SDCBP-201ENST00000260130 KRTAP12-4P60329 112 aa5.18□□□□□ -1.58
SDCBP-201ENST00000260130 GPR98Q8WXG9 6306 aa5.17□□□□□ -1.58
SDCBP-201ENST00000260130 KRTAP20-2Q3LI61 65 aa5.14□□□□□ -1.59
SDCBP-201ENST00000260130 AHNAK2Q8IVF2 5795 aa5.1□□□□□ -1.59
SDCBP-201ENST00000260130 MT1AP04731 61 aa5.08□□□□□ -1.6
SDCBP-201ENST00000260130 KRTAP6-1Q3LI64 71 aa5.04□□□□□ -1.6
SDCBP-201ENST00000260130 KRTAP5-3Q6L8H2 238 aa4.98□□□□□ -1.61
SDCBP-201ENST00000260130 KRTAP5-10Q6L8G5 202 aa4.92□□□□□ -1.62
SDCBP-201ENST00000260130 KRTAP9-4Q9BYQ2 154 aa4.89□□□□□ -1.63
SDCBP-201ENST00000260130 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
SDCBP-201ENST00000260130 KRTAP6-2Q3LI66 62 aa4.77□□□□□ -1.65
SDCBP-201ENST00000260130 KRTAP5-7Q6L8G8 165 aa4.69□□□□□ -1.66
SDCBP-201ENST00000260130 MT3P25713 68 aa4.65□□□□□ -1.67
SDCBP-201ENST00000260130 KRTAP4-11Q9BYQ6 195 aa4.63□□□□□ -1.67
SDCBP-201ENST00000260130 OBSCNQ5VST9 7968 aa4.59□□□□□ -1.67
SDCBP-201ENST00000260130 KRTAP5-8O75690 187 aa4.47□□□□□ -1.69
SDCBP-201ENST00000260130 LCE3DQ9BYE3 92 aa4.37□□□□□ -1.71
SDCBP-201ENST00000260130 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
SDCBP-201ENST00000260130 KRTAP5-1Q6L8H4 278 aa4.29□□□□□ -1.72
SDCBP-201ENST00000260130 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
SDCBP-201ENST00000260130 LCE1EQ5T753 118 aa4.21□□□□□ -1.74
SDCBP-201ENST00000260130 KRTAP9-9Q9BYP9 154 aa4.19□□□□□ -1.74
SDCBP-201ENST00000260130 MUC5BQ9HC84 5762 aaPredicted RBP4.16□□□□□ -1.74
SDCBP-201ENST00000260130 AHNAKQ09666 5890 aaKnown RBP4.13□□□□□ -1.75
SDCBP-201ENST00000260130 PRM1P04553 51 aa4.13□□□□□ -1.75
SDCBP-201ENST00000260130 KRTAP4-2Q9BYR5 136 aa4.06□□□□□ -1.76
SDCBP-201ENST00000260130 LCE1BQ5T7P3 118 aa3.94□□□□□ -1.78
SDCBP-201ENST00000260130 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
SDCBP-201ENST00000260130 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
SDCBP-201ENST00000260130 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
SDCBP-201ENST00000260130 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
SDCBP-201ENST00000260130 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
SDCBP-201ENST00000260130 KRTAP21-2Q3LI59 83 aa3.32□□□□□ -1.88
SDCBP-201ENST00000260130 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
SDCBP-201ENST00000260130 KRTAP4-4Q9BYR3 166 aa3□□□□□ -1.93
SDCBP-201ENST00000260130 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
SDCBP-201ENST00000260130 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
SDCBP-201ENST00000260130 MUC16Q8WXI7 14507 aa2□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 5.6 ms