RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 MACF1Q9UPN3 7388 aaKnown RBP7.24□□□□□ -1.25
CLN6-201ENST00000249806 KRTAP19-3Q7Z4W3 81 aa7.23□□□□□ -1.25
CLN6-201ENST00000249806 MT1GP13640 62 aa7.18□□□□□ -1.26
CLN6-201ENST00000249806 MT1MQ8N339 61 aa7.17□□□□□ -1.26
CLN6-201ENST00000249806 SPRR2FQ96RM1 72 aa7.16□□□□□ -1.26
CLN6-201ENST00000249806 LOC100996750A0A140TA64 210 aa7.15□□□□□ -1.27
CLN6-201ENST00000249806 KRTAP9-2Q9BYQ4 174 aa7.12□□□□□ -1.27
CLN6-201ENST00000249806 KRTAP2-3P0C7H8 128 aa7.12□□□□□ -1.27
CLN6-201ENST00000249806 KRTAP2-4Q9BYR9 128 aa7.12□□□□□ -1.27
CLN6-201ENST00000249806 KRTAP2-1Q9BYU5 128 aa7.12□□□□□ -1.27
CLN6-201ENST00000249806 DSTQ03001 7570 aaKnown RBP7.06□□□□□ -1.28
CLN6-201ENST00000249806 INE1O15225 51 aa7.05□□□□□ -1.28
CLN6-201ENST00000249806 LCE5AQ5TCM9 118 aa7.04□□□□□ -1.28
CLN6-201ENST00000249806 SYNE2Q8WXH0 6885 aaKnown RBP7.02□□□□□ -1.29
CLN6-201ENST00000249806 CRCT1Q9UGL9 99 aa6.94□□□□□ -1.3
CLN6-201ENST00000249806 MDN1Q9NU22 5596 aa6.86□□□□□ -1.31
CLN6-201ENST00000249806 KRTAP5-9P26371 169 aa6.77□□□□□ -1.33
CLN6-201ENST00000249806 LCE1AQ5T7P2 110 aa6.73□□□□□ -1.33
CLN6-201ENST00000249806 SPRR2EP22531 72 aa6.6□□□□□ -1.35
CLN6-201ENST00000249806 SPRR2BP35325 72 aa6.6□□□□□ -1.35
CLN6-201ENST00000249806 SPRR2AP35326 72 aa6.6□□□□□ -1.35
CLN6-201ENST00000249806 KRTAP6-1Q3LI64 71 aa6.46□□□□□ -1.37
CLN6-201ENST00000249806 LCE3BQ5TA77 95 aa6.46□□□□□ -1.38
CLN6-201ENST00000249806 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.4□□□□□ -1.39
CLN6-201ENST00000249806 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
CLN6-201ENST00000249806 SYNE1Q8NF91 8797 aaKnown RBP6.39□□□□□ -1.39
CLN6-201ENST00000249806 MT1AP04731 61 aa6.38□□□□□ -1.39
CLN6-201ENST00000249806 KRTAP6-3Q3LI67 103 aa6.34□□□□□ -1.39
CLN6-201ENST00000249806 SPRR2DP22532 72 aa6.32□□□□□ -1.4
CLN6-201ENST00000249806 KRTAP4-9Q9BYQ8 210 aa6.29□□□□□ -1.4
CLN6-201ENST00000249806 KRTAP9-6A0A140TA67 174 aa6.26□□□□□ -1.41
CLN6-201ENST00000249806 KRTAP12-4P60329 112 aa6.24□□□□□ -1.41
CLN6-201ENST00000249806 KRTAP9-4Q9BYQ2 154 aa6.05□□□□□ -1.44
CLN6-201ENST00000249806 LCE3DQ9BYE3 92 aa5.98□□□□□ -1.45
CLN6-201ENST00000249806 NEBP20929 6669 aa5.91□□□□□ -1.46
CLN6-201ENST00000249806 LCE3EQ5T5B0 92 aa5.87□□□□□ -1.47
CLN6-201ENST00000249806 KRTAP6-2Q3LI66 62 aa5.85□□□□□ -1.47
CLN6-201ENST00000249806 KRTAP9-7A8MTY7 169 aa5.84□□□□□ -1.47
CLN6-201ENST00000249806 OBSCNQ5VST9 7968 aa5.81□□□□□ -1.48
CLN6-201ENST00000249806 KRTAP5-4Q6L8H1 288 aa5.78□□□□□ -1.48
CLN6-201ENST00000249806 MT3P25713 68 aa5.75□□□□□ -1.49
CLN6-201ENST00000249806 KRTAP4-6Q9BYQ5 205 aa5.62□□□□□ -1.51
CLN6-201ENST00000249806 MT4P47944 62 aa5.59□□□□□ -1.52
CLN6-201ENST00000249806 LCE4AQ5TA78 99 aa5.48□□□□□ -1.53
CLN6-201ENST00000249806 PRM1P04553 51 aa5.47□□□□□ -1.53
CLN6-201ENST00000249806 KRTAP20-2Q3LI61 65 aa5.44□□□□□ -1.54
CLN6-201ENST00000249806 KRTAP2-2Q9BYT5 123 aa5.37□□□□□ -1.55
CLN6-201ENST00000249806 HMCN1Q96RW7 5635 aa5.36□□□□□ -1.55
CLN6-201ENST00000249806 KRTAP5-2Q701N4 177 aa5.33□□□□□ -1.56
CLN6-201ENST00000249806 LCE1DQ5T752 114 aa5.32□□□□□ -1.56
CLN6-201ENST00000249806 KRTAP20-1Q3LI63 56 aa5.21□□□□□ -1.58
CLN6-201ENST00000249806 KRTAP5-3Q6L8H2 238 aa5.2□□□□□ -1.58
CLN6-201ENST00000249806 MUC5ACP98088 5654 aa4.82□□□□□ -1.64
CLN6-201ENST00000249806 LCE1EQ5T753 118 aa4.79□□□□□ -1.64
CLN6-201ENST00000249806 LCE1BQ5T7P3 118 aa4.72□□□□□ -1.65
CLN6-201ENST00000249806 KRTAP5-1Q6L8H4 278 aa4.6□□□□□ -1.67
CLN6-201ENST00000249806 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
CLN6-201ENST00000249806 KRTAP5-10Q6L8G5 202 aa4.56□□□□□ -1.68
CLN6-201ENST00000249806 KRTAP4-2Q9BYR5 136 aa4.56□□□□□ -1.68
CLN6-201ENST00000249806 LCE1CQ5T751 118 aa4.52□□□□□ -1.69
CLN6-201ENST00000249806 KRTAP5-8O75690 187 aa4.4□□□□□ -1.71
CLN6-201ENST00000249806 AHNAK2Q8IVF2 5795 aa4.36□□□□□ -1.71
CLN6-201ENST00000249806 KRTAP5-7Q6L8G8 165 aa4.25□□□□□ -1.73
CLN6-201ENST00000249806 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
CLN6-201ENST00000249806 KRTAP21-2Q3LI59 83 aa4.19□□□□□ -1.74
CLN6-201ENST00000249806 MUC5BQ9HC84 5762 aaPredicted RBP3.93□□□□□ -1.78
CLN6-201ENST00000249806 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
CLN6-201ENST00000249806 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
CLN6-201ENST00000249806 KRTAP4-12Q9BQ66 201 aa3.78□□□□□ -1.8
CLN6-201ENST00000249806 KRTAP9-9Q9BYP9 154 aa3.78□□□□□ -1.8
CLN6-201ENST00000249806 GPR98Q8WXG9 6306 aa3.76□□□□□ -1.81
CLN6-201ENST00000249806 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.84
CLN6-201ENST00000249806 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
CLN6-201ENST00000249806 KRTAP21-1Q3LI58 79 aa3.38□□□□□ -1.87
CLN6-201ENST00000249806 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
CLN6-201ENST00000249806 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
CLN6-201ENST00000249806 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 136.6 ms