RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 MT1GP13640 62 aa7.9□□□□□ -1.14
MSX2-201ENST00000239243 KRTAP9-6A8MVA2 160 aa7.89□□□□□ -1.15
MSX2-201ENST00000239243 SPRR2FQ96RM1 72 aa7.88□□□□□ -1.15
MSX2-201ENST00000239243 MACF1Q9UPN3 7388 aaKnown RBP7.83□□□□□ -1.16
MSX2-201ENST00000239243 MT1MQ8N339 61 aa7.81□□□□□ -1.16
MSX2-201ENST00000239243 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
MSX2-201ENST00000239243 LCE5AQ5TCM9 118 aa7.73□□□□□ -1.17
MSX2-201ENST00000239243 KRTAP5-9P26371 169 aa7.66□□□□□ -1.18
MSX2-201ENST00000239243 KRTAP4-3Q9BYR4 195 aa7.66□□□□□ -1.18
MSX2-201ENST00000239243 SYNE2Q8WXH0 6885 aaKnown RBP7.52□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-1Q9BYU5 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 LOC100996750A0A140TA64 210 aa7.49□□□□□ -1.21
MSX2-201ENST00000239243 LCE1AQ5T7P2 110 aa7.47□□□□□ -1.21
MSX2-201ENST00000239243 SPRR2EP22531 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 SPRR2BP35325 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 SPRR2AP35326 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP9-6A0A140TA67 174 aa7.36□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.35□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP6-3Q3LI67 103 aa7.33□□□□□ -1.24
MSX2-201ENST00000239243 INE1O15225 51 aa7.32□□□□□ -1.24
MSX2-201ENST00000239243 MDN1Q9NU22 5596 aa7.3□□□□□ -1.24
MSX2-201ENST00000239243 DSTQ03001 7570 aaKnown RBP7.24□□□□□ -1.25
MSX2-201ENST00000239243 SPRR2DP22532 72 aa7.09□□□□□ -1.27
MSX2-201ENST00000239243 KRTAP5-5Q701N2 237 aaPredicted RBP6.99□□□□□ -1.29
MSX2-201ENST00000239243 MT1AP04731 61 aa6.99□□□□□ -1.29
MSX2-201ENST00000239243 KRTAP6-1Q3LI64 71 aa6.91□□□□□ -1.3
MSX2-201ENST00000239243 LCE3BQ5TA77 95 aa6.82□□□□□ -1.32
MSX2-201ENST00000239243 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
MSX2-201ENST00000239243 NEBP20929 6669 aa6.68□□□□□ -1.34
MSX2-201ENST00000239243 KRTAP9-4Q9BYQ2 154 aa6.6□□□□□ -1.35
MSX2-201ENST00000239243 SYNE1Q8NF91 8797 aaKnown RBP6.59□□□□□ -1.35
MSX2-201ENST00000239243 KRTAP5-4Q6L8H1 288 aa6.48□□□□□ -1.37
MSX2-201ENST00000239243 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
MSX2-201ENST00000239243 KRTAP12-4P60329 112 aa6.46□□□□□ -1.38
MSX2-201ENST00000239243 LCE3DQ9BYE3 92 aa6.36□□□□□ -1.39
MSX2-201ENST00000239243 MT3P25713 68 aa6.33□□□□□ -1.4
MSX2-201ENST00000239243 KRTAP6-2Q3LI66 62 aa6.3□□□□□ -1.4
MSX2-201ENST00000239243 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
MSX2-201ENST00000239243 LCE3EQ5T5B0 92 aa6.23□□□□□ -1.41
MSX2-201ENST00000239243 KRTAP2-2Q9BYT5 123 aa6.23□□□□□ -1.41
MSX2-201ENST00000239243 MT4P47944 62 aa6.14□□□□□ -1.43
MSX2-201ENST00000239243 KRTAP4-6Q9BYQ5 205 aa6.13□□□□□ -1.43
MSX2-201ENST00000239243 KRTAP20-1Q3LI63 56 aa6.09□□□□□ -1.44
MSX2-201ENST00000239243 KRTAP20-2Q3LI61 65 aa6.06□□□□□ -1.44
MSX2-201ENST00000239243 LCE1DQ5T752 114 aa5.95□□□□□ -1.46
MSX2-201ENST00000239243 KRTAP5-2Q701N4 177 aa5.95□□□□□ -1.46
MSX2-201ENST00000239243 HMCN1Q96RW7 5635 aa5.86□□□□□ -1.47
MSX2-201ENST00000239243 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
MSX2-201ENST00000239243 OBSCNQ5VST9 7968 aa5.74□□□□□ -1.49
MSX2-201ENST00000239243 PRM1P04553 51 aa5.62□□□□□ -1.51
MSX2-201ENST00000239243 LCE1EQ5T753 118 aa5.39□□□□□ -1.55
MSX2-201ENST00000239243 KRTAP4-11Q9BYQ6 195 aa5.15□□□□□ -1.58
MSX2-201ENST00000239243 KRTAP5-1Q6L8H4 278 aa5.08□□□□□ -1.6
MSX2-201ENST00000239243 MUC5ACP98088 5654 aa5.08□□□□□ -1.6
MSX2-201ENST00000239243 LCE1BQ5T7P3 118 aa5.07□□□□□ -1.6
MSX2-201ENST00000239243 KRTAP5-10Q6L8G5 202 aa5.07□□□□□ -1.6
MSX2-201ENST00000239243 LCE1CQ5T751 118 aa5.03□□□□□ -1.6
MSX2-201ENST00000239243 KRTAP4-2Q9BYR5 136 aa4.99□□□□□ -1.61
MSX2-201ENST00000239243 AHNAK2Q8IVF2 5795 aa4.96□□□□□ -1.61
MSX2-201ENST00000239243 KRTAP5-8O75690 187 aa4.93□□□□□ -1.62
MSX2-201ENST00000239243 KRTAP5-7Q6L8G8 165 aa4.87□□□□□ -1.63
MSX2-201ENST00000239243 KRTAP9-9Q9BYP9 154 aa4.82□□□□□ -1.64
MSX2-201ENST00000239243 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.73□□□□□ -1.65
MSX2-201ENST00000239243 KRTAP4-12Q9BQ66 201 aa4.63□□□□□ -1.67
MSX2-201ENST00000239243 KRTAP21-2Q3LI59 83 aa4.51□□□□□ -1.69
MSX2-201ENST00000239243 KRTAP5-11Q6L8G4 156 aa4.4□□□□□ -1.71
MSX2-201ENST00000239243 GPR98Q8WXG9 6306 aa4.26□□□□□ -1.73
MSX2-201ENST00000239243 MUC5BQ9HC84 5762 aaPredicted RBP4.14□□□□□ -1.75
MSX2-201ENST00000239243 KRTAP4-4Q9BYR3 166 aa3.98□□□□□ -1.77
MSX2-201ENST00000239243 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
MSX2-201ENST00000239243 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
MSX2-201ENST00000239243 AHNAKQ09666 5890 aaKnown RBP3.57□□□□□ -1.84
MSX2-201ENST00000239243 KRTAP21-1Q3LI58 79 aa3.5□□□□□ -1.85
MSX2-201ENST00000239243 MUC19Q7Z5P9 8384 aa3.38□□□□□ -1.87
MSX2-201ENST00000239243 MUC16Q8WXI7 14507 aa2.46□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 85 ms