RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 SPRR2DP22532 72 aa3.72□□□□□ -1.81
VAMP4-201ENST00000236192 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
VAMP4-201ENST00000236192 LCE2BO14633 110 aa3.7□□□□□ -1.82
VAMP4-201ENST00000236192 KRTAP4-3Q9BYR4 195 aa3.7□□□□□ -1.82
VAMP4-201ENST00000236192 KRTAP9-7A8MTY7 169 aa3.68□□□□□ -1.82
VAMP4-201ENST00000236192 HMCN2Q8NDA2 5059 aa3.66□□□□□ -1.82
VAMP4-201ENST00000236192 KRTAP9-2Q9BYQ4 174 aa3.66□□□□□ -1.82
VAMP4-201ENST00000236192 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
VAMP4-201ENST00000236192 LCE2DQ5TA82 110 aaPredicted RBP3.61□□□□□ -1.83
VAMP4-201ENST00000236192 BIRC6Q9NR09 4857 aa3.59□□□□□ -1.84
VAMP4-201ENST00000236192 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
VAMP4-201ENST00000236192 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
VAMP4-201ENST00000236192 SYNE1Q8NF91 8797 aaKnown RBP3.51□□□□□ -1.85
VAMP4-201ENST00000236192 KRTAP2-2Q9BYT5 123 aa3.5□□□□□ -1.85
VAMP4-201ENST00000236192 PCLOQ9Y6V0 5065 aa3.42□□□□□ -1.86
VAMP4-201ENST00000236192 KRTAP6-3Q3LI67 103 aa3.41□□□□□ -1.86
VAMP4-201ENST00000236192 ABCA13Q86UQ4 5058 aa3.41□□□□□ -1.86
VAMP4-201ENST00000236192 KRTAP6-1Q3LI64 71 aa3.4□□□□□ -1.87
VAMP4-201ENST00000236192 EPPK1P58107 5090 aaKnown RBP3.38□□□□□ -1.87
VAMP4-201ENST00000236192 UBR4Q5T4S7 5183 aa3.36□□□□□ -1.87
VAMP4-201ENST00000236192 MUC2Q02817 5179 aa3.34□□□□□ -1.87
VAMP4-201ENST00000236192 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
VAMP4-201ENST00000236192 FAT4Q6V0I7 4981 aa3.29□□□□□ -1.88
VAMP4-201ENST00000236192 KRTAP19-6Q3LI70 58 aa3.27□□□□□ -1.89
VAMP4-201ENST00000236192 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
VAMP4-201ENST00000236192 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
VAMP4-201ENST00000236192 LCE1BQ5T7P3 118 aa3.22□□□□□ -1.89
VAMP4-201ENST00000236192 RNF213Q63HN8 5207 aa3.21□□□□□ -1.9
VAMP4-201ENST00000236192 MT4P47944 62 aa3.2□□□□□ -1.9
VAMP4-201ENST00000236192 LCE1DQ5T752 114 aa3.19□□□□□ -1.9
VAMP4-201ENST00000236192 LCE5AQ5TCM9 118 aa3.19□□□□□ -1.9
VAMP4-201ENST00000236192 KRTAP4-6Q9BYQ5 205 aa3.18□□□□□ -1.9
VAMP4-201ENST00000236192 OBSCNQ5VST9 7968 aa3.15□□□□□ -1.91
VAMP4-201ENST00000236192 LCE2AQ5TA79 106 aaPredicted RBP3.11□□□□□ -1.91
VAMP4-201ENST00000236192 KMT2DO14686 5537 aa3.09□□□□□ -1.91
VAMP4-201ENST00000236192 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
VAMP4-201ENST00000236192 FCGBPQ9Y6R7 5405 aaPredicted RBP2.97□□□□□ -1.93
VAMP4-201ENST00000236192 KRTAP20-1Q3LI63 56 aa2.97□□□□□ -1.93
VAMP4-201ENST00000236192 SYNE2Q8WXH0 6885 aaKnown RBP2.95□□□□□ -1.94
VAMP4-201ENST00000236192 LCE1CQ5T751 118 aa2.87□□□□□ -1.95
VAMP4-201ENST00000236192 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
VAMP4-201ENST00000236192 LCE4AQ5TA78 99 aa2.86□□□□□ -1.95
VAMP4-201ENST00000236192 SSPOA2VEC9 5147 aa2.86□□□□□ -1.95
VAMP4-201ENST00000236192 USH2AO75445 5202 aa2.82□□□□□ -1.96
VAMP4-201ENST00000236192 DSTQ03001 7570 aaKnown RBP2.73□□□□□ -1.97
VAMP4-201ENST00000236192 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.66□□□□□ -1.98
VAMP4-201ENST00000236192 FSIP2Q5CZC0 6907 aa2.62□□□□□ -1.99
VAMP4-201ENST00000236192 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
VAMP4-201ENST00000236192 MUC12Q9UKN1 5478 aa2.59□□□□□ -2
VAMP4-201ENST00000236192 KRTAP4-2Q9BYR5 136 aa2.49□□□□□ -2.01
VAMP4-201ENST00000236192 KRTAP4-12Q9BQ66 201 aa2.48□□□□□ -2.01
VAMP4-201ENST00000236192 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
VAMP4-201ENST00000236192 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
VAMP4-201ENST00000236192 GPR98Q8WXG9 6306 aa2.38□□□□□ -2.03
VAMP4-201ENST00000236192 KRTAP5-9P26371 169 aa2.36□□□□□ -2.03
VAMP4-201ENST00000236192 KRTAP5-10Q6L8G5 202 aa2.34□□□□□ -2.03
VAMP4-201ENST00000236192 MACF1Q9UPN3 7388 aaKnown RBP2.33□□□□□ -2.04
VAMP4-201ENST00000236192 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
VAMP4-201ENST00000236192 KRTAP5-4Q6L8H1 288 aa2.31□□□□□ -2.04
VAMP4-201ENST00000236192 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
VAMP4-201ENST00000236192 MDN1Q9NU22 5596 aa2.29□□□□□ -2.04
VAMP4-201ENST00000236192 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
VAMP4-201ENST00000236192 NEBP20929 6669 aa2.19□□□□□ -2.06
VAMP4-201ENST00000236192 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
VAMP4-201ENST00000236192 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
VAMP4-201ENST00000236192 MUC5ACP98088 5654 aa2.13□□□□□ -2.07
VAMP4-201ENST00000236192 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
VAMP4-201ENST00000236192 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
VAMP4-201ENST00000236192 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
VAMP4-201ENST00000236192 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
VAMP4-201ENST00000236192 KRTAP5-11Q6L8G4 156 aa1.69□□□□□ -2.14
VAMP4-201ENST00000236192 PHGR1C9JFL3 82 aa1.66□□□□□ -2.14
VAMP4-201ENST00000236192 KRTAP5-8O75690 187 aa1.61□□□□□ -2.15
VAMP4-201ENST00000236192 MUC5BQ9HC84 5762 aaPredicted RBP1.59□□□□□ -2.15
VAMP4-201ENST00000236192 KRTAP5-7Q6L8G8 165 aa1.44□□□□□ -2.18
VAMP4-201ENST00000236192 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.18
VAMP4-201ENST00000236192 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 75 ms