RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 LOC100996750A0A140TA64 210 aa6.56□□□□□ -1.36
YBX3-201ENST00000228251 KRTAP4-6Q9BYQ5 205 aa6.56□□□□□ -1.36
YBX3-201ENST00000228251 KRTAP9-6A0A140TA67 174 aa6.49□□□□□ -1.37
YBX3-201ENST00000228251 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
YBX3-201ENST00000228251 KRTAP19-3Q7Z4W3 81 aa6.44□□□□□ -1.38
YBX3-201ENST00000228251 MUC12Q9UKN1 5478 aa6.41□□□□□ -1.38
YBX3-201ENST00000228251 MT1GP13640 62 aa6.4□□□□□ -1.38
YBX3-201ENST00000228251 MT1MQ8N339 61 aa6.39□□□□□ -1.39
YBX3-201ENST00000228251 KRTAP2-3P0C7H8 128 aa6.33□□□□□ -1.4
YBX3-201ENST00000228251 KRTAP4-3Q9BYR4 195 aa6.33□□□□□ -1.4
YBX3-201ENST00000228251 KRTAP2-4Q9BYR9 128 aa6.33□□□□□ -1.4
YBX3-201ENST00000228251 KRTAP2-1Q9BYU5 128 aa6.33□□□□□ -1.4
YBX3-201ENST00000228251 LCE5AQ5TCM9 118 aa6.3□□□□□ -1.4
YBX3-201ENST00000228251 SPRR2FQ96RM1 72 aa6.29□□□□□ -1.4
YBX3-201ENST00000228251 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.29□□□□□ -1.4
YBX3-201ENST00000228251 SYNE2Q8WXH0 6885 aaKnown RBP6.27□□□□□ -1.41
YBX3-201ENST00000228251 KRTAP5-9P26371 169 aa6.23□□□□□ -1.41
YBX3-201ENST00000228251 INE1O15225 51 aa6.17□□□□□ -1.42
YBX3-201ENST00000228251 KRTAP6-3Q3LI67 103 aa6.13□□□□□ -1.43
YBX3-201ENST00000228251 LCE1AQ5T7P2 110 aa6.03□□□□□ -1.44
YBX3-201ENST00000228251 MDN1Q9NU22 5596 aa6.02□□□□□ -1.45
YBX3-201ENST00000228251 KRTAP9-7A8MTY7 169 aa5.95□□□□□ -1.46
YBX3-201ENST00000228251 SPRR2EP22531 72 aa5.95□□□□□ -1.46
YBX3-201ENST00000228251 SPRR2BP35325 72 aa5.95□□□□□ -1.46
YBX3-201ENST00000228251 SPRR2AP35326 72 aa5.95□□□□□ -1.46
YBX3-201ENST00000228251 DSTQ03001 7570 aaKnown RBP5.88□□□□□ -1.47
YBX3-201ENST00000228251 KRTAP5-5Q701N2 237 aaPredicted RBP5.77□□□□□ -1.49
YBX3-201ENST00000228251 SPRR2DP22532 72 aa5.73□□□□□ -1.49
YBX3-201ENST00000228251 MT1AP04731 61 aa5.71□□□□□ -1.5
YBX3-201ENST00000228251 NEBP20929 6669 aa5.71□□□□□ -1.5
YBX3-201ENST00000228251 KRTAP6-1Q3LI64 71 aa5.7□□□□□ -1.5
YBX3-201ENST00000228251 LCE3BQ5TA77 95 aa5.6□□□□□ -1.51
YBX3-201ENST00000228251 SYNE1Q8NF91 8797 aaKnown RBP5.47□□□□□ -1.53
YBX3-201ENST00000228251 KRTAP9-9Q9BYP9 154 aa5.45□□□□□ -1.54
YBX3-201ENST00000228251 KRTAP9-4Q9BYQ2 154 aa5.45□□□□□ -1.54
YBX3-201ENST00000228251 KRTAP4-9Q9BYQ8 210 aa5.43□□□□□ -1.54
YBX3-201ENST00000228251 KRTAP4-12Q9BQ66 201 aa5.41□□□□□ -1.54
YBX3-201ENST00000228251 KRTAP12-4P60329 112 aa5.39□□□□□ -1.55
YBX3-201ENST00000228251 KRTAP20-1Q3LI63 56 aa5.27□□□□□ -1.57
YBX3-201ENST00000228251 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
YBX3-201ENST00000228251 KRTAP2-2Q9BYT5 123 aa5.24□□□□□ -1.57
YBX3-201ENST00000228251 LCE3DQ9BYE3 92 aa5.23□□□□□ -1.57
YBX3-201ENST00000228251 LCE1DQ5T752 114 aa5.19□□□□□ -1.58
YBX3-201ENST00000228251 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.58
YBX3-201ENST00000228251 LCE3EQ5T5B0 92 aa5.14□□□□□ -1.59
YBX3-201ENST00000228251 MT3P25713 68 aa5.11□□□□□ -1.59
YBX3-201ENST00000228251 LCE4AQ5TA78 99 aa5.09□□□□□ -1.59
YBX3-201ENST00000228251 KRTAP4-2Q9BYR5 136 aa5.07□□□□□ -1.6
YBX3-201ENST00000228251 MT4P47944 62 aa4.98□□□□□ -1.61
YBX3-201ENST00000228251 KRTAP20-2Q3LI61 65 aa4.88□□□□□ -1.63
YBX3-201ENST00000228251 KRTAP5-2Q701N4 177 aa4.88□□□□□ -1.63
YBX3-201ENST00000228251 HMCN1Q96RW7 5635 aa4.88□□□□□ -1.63
YBX3-201ENST00000228251 KRTAP5-3Q6L8H2 238 aa4.84□□□□□ -1.63
YBX3-201ENST00000228251 KRTAP4-11Q9BYQ6 195 aa4.83□□□□□ -1.64
YBX3-201ENST00000228251 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
YBX3-201ENST00000228251 PRM1P04553 51 aa4.72□□□□□ -1.65
YBX3-201ENST00000228251 LCE1EQ5T753 118 aa4.35□□□□□ -1.71
YBX3-201ENST00000228251 AHNAK2Q8IVF2 5795 aa4.32□□□□□ -1.72
YBX3-201ENST00000228251 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
YBX3-201ENST00000228251 KRTAP5-10Q6L8G5 202 aa4.17□□□□□ -1.74
YBX3-201ENST00000228251 KRTAP5-1Q6L8H4 278 aa4.14□□□□□ -1.75
YBX3-201ENST00000228251 LCE1CQ5T751 118 aa4.08□□□□□ -1.76
YBX3-201ENST00000228251 LCE1BQ5T7P3 118 aa4.08□□□□□ -1.76
YBX3-201ENST00000228251 KRTAP5-8O75690 187 aa4.06□□□□□ -1.76
YBX3-201ENST00000228251 KRTAP5-7Q6L8G8 165 aa3.96□□□□□ -1.78
YBX3-201ENST00000228251 GPR98Q8WXG9 6306 aa3.95□□□□□ -1.78
YBX3-201ENST00000228251 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.89□□□□□ -1.79
YBX3-201ENST00000228251 KRTAP21-2Q3LI59 83 aa3.74□□□□□ -1.81
YBX3-201ENST00000228251 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
YBX3-201ENST00000228251 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
YBX3-201ENST00000228251 MUC5BQ9HC84 5762 aaPredicted RBP3.5□□□□□ -1.85
YBX3-201ENST00000228251 AHNAKQ09666 5890 aaKnown RBP3.29□□□□□ -1.88
YBX3-201ENST00000228251 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
YBX3-201ENST00000228251 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
YBX3-201ENST00000228251 KRTAP21-1Q3LI58 79 aa3□□□□□ -1.93
YBX3-201ENST00000228251 MUC19Q7Z5P9 8384 aa2.85□□□□□ -1.95
YBX3-201ENST00000228251 MUC16Q8WXI7 14507 aa2.08□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 62.6 ms