RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 KRTAP19-4Q3LI73 84 aa5.29□□□□□ -1.56
CCDC47-201ENST00000225726 SPRR2FQ96RM1 72 aa5.18□□□□□ -1.58
CCDC47-201ENST00000225726 MACF1Q9UPN3 7388 aaKnown RBP5.15□□□□□ -1.58
CCDC47-201ENST00000225726 KRTAP19-3Q7Z4W3 81 aa5.14□□□□□ -1.59
CCDC47-201ENST00000225726 KRTAP4-7Q9BYR0 210 aa5.12□□□□□ -1.59
CCDC47-201ENST00000225726 MT1GP13640 62 aa5.1□□□□□ -1.59
CCDC47-201ENST00000225726 KRTAP5-9P26371 169 aa5.09□□□□□ -1.59
CCDC47-201ENST00000225726 MT1MQ8N339 61 aa5.06□□□□□ -1.6
CCDC47-201ENST00000225726 MUC12Q9UKN1 5478 aa5.04□□□□□ -1.6
CCDC47-201ENST00000225726 LCE5AQ5TCM9 118 aa5.03□□□□□ -1.6
CCDC47-201ENST00000225726 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.02□□□□□ -1.61
CCDC47-201ENST00000225726 KRTAP9-6A8MVA2 160 aa5□□□□□ -1.61
CCDC47-201ENST00000225726 SYNE1Q8NF91 8797 aaKnown RBP4.98□□□□□ -1.61
CCDC47-201ENST00000225726 SYNE2Q8WXH0 6885 aaKnown RBP4.96□□□□□ -1.62
CCDC47-201ENST00000225726 KRTAP6-3Q3LI67 103 aa4.95□□□□□ -1.62
CCDC47-201ENST00000225726 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
CCDC47-201ENST00000225726 LCE1AQ5T7P2 110 aa4.94□□□□□ -1.62
CCDC47-201ENST00000225726 SPRR2EP22531 72 aa4.89□□□□□ -1.63
CCDC47-201ENST00000225726 SPRR2BP35325 72 aa4.89□□□□□ -1.63
CCDC47-201ENST00000225726 SPRR2AP35326 72 aa4.89□□□□□ -1.63
CCDC47-201ENST00000225726 KRTAP9-7A8MTY7 169 aa4.84□□□□□ -1.63
CCDC47-201ENST00000225726 DSTQ03001 7570 aaKnown RBP4.82□□□□□ -1.64
CCDC47-201ENST00000225726 MDN1Q9NU22 5596 aa4.81□□□□□ -1.64
CCDC47-201ENST00000225726 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
CCDC47-201ENST00000225726 SPRR2DP22532 72 aa4.71□□□□□ -1.65
CCDC47-201ENST00000225726 KRTAP2-3P0C7H8 128 aa4.68□□□□□ -1.66
CCDC47-201ENST00000225726 KRTAP2-4Q9BYR9 128 aa4.68□□□□□ -1.66
CCDC47-201ENST00000225726 KRTAP2-1Q9BYU5 128 aa4.68□□□□□ -1.66
CCDC47-201ENST00000225726 KRTAP5-5Q701N2 237 aaPredicted RBP4.55□□□□□ -1.68
CCDC47-201ENST00000225726 NEBP20929 6669 aa4.52□□□□□ -1.69
CCDC47-201ENST00000225726 LCE3BQ5TA77 95 aa4.51□□□□□ -1.69
CCDC47-201ENST00000225726 MT1AP04731 61 aa4.49□□□□□ -1.69
CCDC47-201ENST00000225726 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
CCDC47-201ENST00000225726 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
CCDC47-201ENST00000225726 KRTAP20-1Q3LI63 56 aa4.29□□□□□ -1.72
CCDC47-201ENST00000225726 KRTAP5-4Q6L8H1 288 aa4.29□□□□□ -1.72
CCDC47-201ENST00000225726 KRTAP9-4Q9BYQ2 154 aa4.26□□□□□ -1.73
CCDC47-201ENST00000225726 KRTAP4-9Q9BYQ8 210 aa4.23□□□□□ -1.73
CCDC47-201ENST00000225726 KRTAP2-2Q9BYT5 123 aa4.22□□□□□ -1.73
CCDC47-201ENST00000225726 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
CCDC47-201ENST00000225726 MT4P47944 62 aa4.08□□□□□ -1.76
CCDC47-201ENST00000225726 KRTAP6-2Q3LI66 62 aa4.08□□□□□ -1.76
CCDC47-201ENST00000225726 MT3P25713 68 aa4.07□□□□□ -1.76
CCDC47-201ENST00000225726 KRTAP4-6Q9BYQ5 205 aa4.06□□□□□ -1.76
CCDC47-201ENST00000225726 PRM1P04553 51 aa4.05□□□□□ -1.76
CCDC47-201ENST00000225726 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
CCDC47-201ENST00000225726 LCE1DQ5T752 114 aa3.99□□□□□ -1.77
CCDC47-201ENST00000225726 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
CCDC47-201ENST00000225726 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
CCDC47-201ENST00000225726 MUC19Q7Z5P9 8384 aa3.95□□□□□ -1.78
CCDC47-201ENST00000225726 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CCDC47-201ENST00000225726 LCE3EQ5T5B0 92 aa3.89□□□□□ -1.79
CCDC47-201ENST00000225726 HMCN1Q96RW7 5635 aa3.89□□□□□ -1.79
CCDC47-201ENST00000225726 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
CCDC47-201ENST00000225726 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
CCDC47-201ENST00000225726 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
CCDC47-201ENST00000225726 AHNAK2Q8IVF2 5795 aa3.41□□□□□ -1.86
CCDC47-201ENST00000225726 KRTAP5-1Q6L8H4 278 aa3.36□□□□□ -1.87
CCDC47-201ENST00000225726 KRTAP5-10Q6L8G5 202 aa3.31□□□□□ -1.88
CCDC47-201ENST00000225726 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
CCDC47-201ENST00000225726 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
CCDC47-201ENST00000225726 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
CCDC47-201ENST00000225726 LCE1CQ5T751 118 aa3.26□□□□□ -1.89
CCDC47-201ENST00000225726 KRTAP4-2Q9BYR5 136 aa3.26□□□□□ -1.89
CCDC47-201ENST00000225726 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
CCDC47-201ENST00000225726 KRTAP5-7Q6L8G8 165 aa3.24□□□□□ -1.89
CCDC47-201ENST00000225726 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.07□□□□□ -1.92
CCDC47-201ENST00000225726 KRTAP9-9Q9BYP9 154 aa2.96□□□□□ -1.94
CCDC47-201ENST00000225726 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
CCDC47-201ENST00000225726 KRTAP5-11Q6L8G4 156 aa2.87□□□□□ -1.95
CCDC47-201ENST00000225726 MUC5BQ9HC84 5762 aaPredicted RBP2.81□□□□□ -1.96
CCDC47-201ENST00000225726 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
CCDC47-201ENST00000225726 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
CCDC47-201ENST00000225726 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
CCDC47-201ENST00000225726 PHGR1C9JFL3 82 aa2.46□□□□□ -2.02
CCDC47-201ENST00000225726 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
CCDC47-201ENST00000225726 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 15.3 ms