RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MT1LQ93083 61 aa6.45□□□□□ -1.38
VIM-201ENST00000224237 SPRR2FQ96RM1 72 aa6.45□□□□□ -1.38
VIM-201ENST00000224237 MUC12Q9UKN1 5478 aa6.45□□□□□ -1.38
VIM-201ENST00000224237 KRTAP19-4Q3LI73 84 aa6.43□□□□□ -1.38
VIM-201ENST00000224237 LCE3CQ5T5A8 94 aa6.41□□□□□ -1.38
VIM-201ENST00000224237 KRTAP5-9P26371 169 aa6.32□□□□□ -1.4
VIM-201ENST00000224237 KRTAP19-3Q7Z4W3 81 aa6.31□□□□□ -1.4
VIM-201ENST00000224237 KRTAP4-7Q9BYR0 210 aa6.29□□□□□ -1.4
VIM-201ENST00000224237 KRTAP6-3Q3LI67 103 aa6.27□□□□□ -1.41
VIM-201ENST00000224237 MT1GP13640 62 aa6.26□□□□□ -1.41
VIM-201ENST00000224237 MDN1Q9NU22 5596 aa6.21□□□□□ -1.41
VIM-201ENST00000224237 LCE5AQ5TCM9 118 aa6.19□□□□□ -1.42
VIM-201ENST00000224237 MT1MQ8N339 61 aa6.18□□□□□ -1.42
VIM-201ENST00000224237 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.42
VIM-201ENST00000224237 KRTAP4-3Q9BYR4 195 aa6.13□□□□□ -1.43
VIM-201ENST00000224237 SPRR2EP22531 72 aa6.11□□□□□ -1.43
VIM-201ENST00000224237 SPRR2BP35325 72 aa6.11□□□□□ -1.43
VIM-201ENST00000224237 SPRR2AP35326 72 aa6.11□□□□□ -1.43
VIM-201ENST00000224237 NEBP20929 6669 aa6.09□□□□□ -1.44
VIM-201ENST00000224237 KRTAP9-6A8MVA2 160 aa6.05□□□□□ -1.44
VIM-201ENST00000224237 DSTQ03001 7570 aaKnown RBP5.95□□□□□ -1.46
VIM-201ENST00000224237 LOC100996750A0A140TA64 210 aa5.92□□□□□ -1.46
VIM-201ENST00000224237 KRTAP4-6Q9BYQ5 205 aa5.92□□□□□ -1.46
VIM-201ENST00000224237 KRTAP20-1Q3LI63 56 aa5.91□□□□□ -1.46
VIM-201ENST00000224237 SPRR2DP22532 72 aa5.88□□□□□ -1.47
VIM-201ENST00000224237 INE1O15225 51 aa5.85□□□□□ -1.47
VIM-201ENST00000224237 KRTAP2-3P0C7H8 128 aa5.69□□□□□ -1.5
VIM-201ENST00000224237 KRTAP2-4Q9BYR9 128 aa5.69□□□□□ -1.5
VIM-201ENST00000224237 KRTAP2-1Q9BYU5 128 aa5.69□□□□□ -1.5
VIM-201ENST00000224237 LCE3BQ5TA77 95 aa5.64□□□□□ -1.51
VIM-201ENST00000224237 KRTAP5-5Q701N2 237 aaPredicted RBP5.57□□□□□ -1.52
VIM-201ENST00000224237 KRTAP2-2Q9BYT5 123 aa5.5□□□□□ -1.53
VIM-201ENST00000224237 MT1AP04731 61 aa5.47□□□□□ -1.53
VIM-201ENST00000224237 KRTAP6-1Q3LI64 71 aa5.43□□□□□ -1.54
VIM-201ENST00000224237 SYNE1Q8NF91 8797 aaKnown RBP5.3□□□□□ -1.56
VIM-201ENST00000224237 KRTAP5-4Q6L8H1 288 aa5.28□□□□□ -1.56
VIM-201ENST00000224237 KRTAP9-4Q9BYQ2 154 aa5.2□□□□□ -1.58
VIM-201ENST00000224237 LCE4AQ5TA78 99 aa5.17□□□□□ -1.58
VIM-201ENST00000224237 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
VIM-201ENST00000224237 MT4P47944 62 aa5.15□□□□□ -1.58
VIM-201ENST00000224237 KRTAP4-9Q9BYQ8 210 aa5.12□□□□□ -1.59
VIM-201ENST00000224237 GPR98Q8WXG9 6306 aa5.1□□□□□ -1.59
VIM-201ENST00000224237 LCE1DQ5T752 114 aa5.04□□□□□ -1.6
VIM-201ENST00000224237 KRTAP6-2Q3LI66 62 aa5□□□□□ -1.61
VIM-201ENST00000224237 HMCN1Q96RW7 5635 aa4.98□□□□□ -1.61
VIM-201ENST00000224237 MT3P25713 68 aa4.96□□□□□ -1.61
VIM-201ENST00000224237 KRTAP20-2Q3LI61 65 aa4.96□□□□□ -1.61
VIM-201ENST00000224237 KRTAP5-3Q6L8H2 238 aa4.96□□□□□ -1.61
VIM-201ENST00000224237 LCE3DQ9BYE3 92 aa4.83□□□□□ -1.64
VIM-201ENST00000224237 KRTAP5-2Q701N4 177 aa4.81□□□□□ -1.64
VIM-201ENST00000224237 LCE3EQ5T5B0 92 aa4.71□□□□□ -1.66
VIM-201ENST00000224237 OBSCNQ5VST9 7968 aa4.7□□□□□ -1.66
VIM-201ENST00000224237 AHNAK2Q8IVF2 5795 aa4.7□□□□□ -1.66
VIM-201ENST00000224237 KRTAP9-9Q9BYP9 154 aa4.69□□□□□ -1.66
VIM-201ENST00000224237 KRTAP5-10Q6L8G5 202 aa4.62□□□□□ -1.67
VIM-201ENST00000224237 KRTAP5-7Q6L8G8 165 aa4.49□□□□□ -1.69
VIM-201ENST00000224237 KRTAP4-12Q9BQ66 201 aa4.49□□□□□ -1.69
VIM-201ENST00000224237 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
VIM-201ENST00000224237 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
VIM-201ENST00000224237 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
VIM-201ENST00000224237 PRM1P04553 51 aa4.27□□□□□ -1.73
VIM-201ENST00000224237 KRTAP5-1Q6L8H4 278 aa4.17□□□□□ -1.74
VIM-201ENST00000224237 KRTAP5-8O75690 187 aa4.15□□□□□ -1.75
VIM-201ENST00000224237 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
VIM-201ENST00000224237 LCE1CQ5T751 118 aa4.01□□□□□ -1.77
VIM-201ENST00000224237 MUC5ACP98088 5654 aa4.01□□□□□ -1.77
VIM-201ENST00000224237 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
VIM-201ENST00000224237 MUC5BQ9HC84 5762 aaPredicted RBP3.89□□□□□ -1.79
VIM-201ENST00000224237 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
VIM-201ENST00000224237 KRTAP21-2Q3LI59 83 aa3.56□□□□□ -1.84
VIM-201ENST00000224237 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
VIM-201ENST00000224237 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
VIM-201ENST00000224237 LCE1FQ5T754 118 aa3.17□□□□□ -1.9
VIM-201ENST00000224237 PHGR1C9JFL3 82 aa3.03□□□□□ -1.93
VIM-201ENST00000224237 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
VIM-201ENST00000224237 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
VIM-201ENST00000224237 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms