RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 MT1LQ93083 61 aa7.74□□□□□ -1.17
CCDC9-201ENST00000221922 MACF1Q9UPN3 7388 aaKnown RBP7.69□□□□□ -1.18
CCDC9-201ENST00000221922 KRTAP4-7Q9BYR0 210 aa7.63□□□□□ -1.19
CCDC9-201ENST00000221922 KRTAP2-3P0C7H8 128 aa7.58□□□□□ -1.2
CCDC9-201ENST00000221922 KRTAP2-4Q9BYR9 128 aa7.58□□□□□ -1.2
CCDC9-201ENST00000221922 KRTAP2-1Q9BYU5 128 aa7.58□□□□□ -1.2
CCDC9-201ENST00000221922 SYNE2Q8WXH0 6885 aaKnown RBP7.53□□□□□ -1.2
CCDC9-201ENST00000221922 KRTAP19-3Q7Z4W3 81 aa7.4□□□□□ -1.22
CCDC9-201ENST00000221922 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.4□□□□□ -1.23
CCDC9-201ENST00000221922 MT1GP13640 62 aa7.37□□□□□ -1.23
CCDC9-201ENST00000221922 MT1MQ8N339 61 aa7.32□□□□□ -1.24
CCDC9-201ENST00000221922 SPRR2FQ96RM1 72 aa7.29□□□□□ -1.24
CCDC9-201ENST00000221922 MUC12Q9UKN1 5478 aa7.28□□□□□ -1.24
CCDC9-201ENST00000221922 KRTAP4-3Q9BYR4 195 aa7.23□□□□□ -1.25
CCDC9-201ENST00000221922 LCE5AQ5TCM9 118 aa7.22□□□□□ -1.25
CCDC9-201ENST00000221922 MDN1Q9NU22 5596 aa7.13□□□□□ -1.27
CCDC9-201ENST00000221922 LOC100996750A0A140TA64 210 aa7.12□□□□□ -1.27
CCDC9-201ENST00000221922 KRTAP5-9P26371 169 aa7.12□□□□□ -1.27
CCDC9-201ENST00000221922 KRTAP6-3Q3LI67 103 aa7.12□□□□□ -1.27
CCDC9-201ENST00000221922 KRTAP9-7A8MTY7 169 aa7.07□□□□□ -1.28
CCDC9-201ENST00000221922 LCE1AQ5T7P2 110 aa6.92□□□□□ -1.3
CCDC9-201ENST00000221922 NEBP20929 6669 aa6.88□□□□□ -1.31
CCDC9-201ENST00000221922 SPRR2EP22531 72 aa6.87□□□□□ -1.31
CCDC9-201ENST00000221922 SPRR2BP35325 72 aa6.87□□□□□ -1.31
CCDC9-201ENST00000221922 SPRR2AP35326 72 aa6.87□□□□□ -1.31
CCDC9-201ENST00000221922 DSTQ03001 7570 aaKnown RBP6.75□□□□□ -1.33
CCDC9-201ENST00000221922 KRTAP12-4P60329 112 aa6.64□□□□□ -1.35
CCDC9-201ENST00000221922 SPRR2DP22532 72 aa6.62□□□□□ -1.35
CCDC9-201ENST00000221922 KRTAP5-5Q701N2 237 aaPredicted RBP6.57□□□□□ -1.36
CCDC9-201ENST00000221922 MT1AP04731 61 aa6.56□□□□□ -1.36
CCDC9-201ENST00000221922 LCE3BQ5TA77 95 aa6.53□□□□□ -1.36
CCDC9-201ENST00000221922 KRTAP6-1Q3LI64 71 aa6.52□□□□□ -1.37
CCDC9-201ENST00000221922 KRTAP4-9Q9BYQ8 210 aa6.38□□□□□ -1.39
CCDC9-201ENST00000221922 KRTAP20-1Q3LI63 56 aa6.26□□□□□ -1.41
CCDC9-201ENST00000221922 SYNE1Q8NF91 8797 aaKnown RBP6.23□□□□□ -1.41
CCDC9-201ENST00000221922 LCE3DQ9BYE3 92 aa6.22□□□□□ -1.41
CCDC9-201ENST00000221922 KRTAP9-4Q9BYQ2 154 aa6.18□□□□□ -1.42
CCDC9-201ENST00000221922 LCE3EQ5T5B0 92 aa6.16□□□□□ -1.42
CCDC9-201ENST00000221922 KRTAP2-2Q9BYT5 123 aa6.12□□□□□ -1.43
CCDC9-201ENST00000221922 KRTAP5-4Q6L8H1 288 aa6.02□□□□□ -1.45
CCDC9-201ENST00000221922 MT3P25713 68 aa5.92□□□□□ -1.46
CCDC9-201ENST00000221922 KRTAP6-2Q3LI66 62 aa5.92□□□□□ -1.46
CCDC9-201ENST00000221922 PRM1P04553 51 aa5.87□□□□□ -1.47
CCDC9-201ENST00000221922 LCE4AQ5TA78 99 aa5.81□□□□□ -1.48
CCDC9-201ENST00000221922 MT4P47944 62 aa5.79□□□□□ -1.48
CCDC9-201ENST00000221922 HMCN1Q96RW7 5635 aa5.75□□□□□ -1.49
CCDC9-201ENST00000221922 LCE1DQ5T752 114 aa5.71□□□□□ -1.5
CCDC9-201ENST00000221922 KRTAP4-6Q9BYQ5 205 aa5.71□□□□□ -1.5
CCDC9-201ENST00000221922 KRTAP20-2Q3LI61 65 aa5.61□□□□□ -1.51
CCDC9-201ENST00000221922 KRTAP5-2Q701N4 177 aa5.55□□□□□ -1.52
CCDC9-201ENST00000221922 OBSCNQ5VST9 7968 aa5.41□□□□□ -1.54
CCDC9-201ENST00000221922 KRTAP5-3Q6L8H2 238 aa5.38□□□□□ -1.55
CCDC9-201ENST00000221922 AHNAK2Q8IVF2 5795 aa5.25□□□□□ -1.57
CCDC9-201ENST00000221922 LCE1EQ5T753 118 aa5.01□□□□□ -1.61
CCDC9-201ENST00000221922 GPR98Q8WXG9 6306 aa5□□□□□ -1.61
CCDC9-201ENST00000221922 KRTAP4-11Q9BYQ6 195 aa4.87□□□□□ -1.63
CCDC9-201ENST00000221922 KRTAP5-10Q6L8G5 202 aa4.86□□□□□ -1.63
CCDC9-201ENST00000221922 MUC5ACP98088 5654 aa4.83□□□□□ -1.64
CCDC9-201ENST00000221922 KRTAP5-1Q6L8H4 278 aa4.73□□□□□ -1.65
CCDC9-201ENST00000221922 LCE1BQ5T7P3 118 aa4.72□□□□□ -1.65
CCDC9-201ENST00000221922 KRTAP5-8O75690 187 aa4.68□□□□□ -1.66
CCDC9-201ENST00000221922 LCE1CQ5T751 118 aa4.68□□□□□ -1.66
CCDC9-201ENST00000221922 KRTAP4-2Q9BYR5 136 aa4.68□□□□□ -1.66
CCDC9-201ENST00000221922 KRTAP5-7Q6L8G8 165 aa4.52□□□□□ -1.69
CCDC9-201ENST00000221922 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.44□□□□□ -1.7
CCDC9-201ENST00000221922 KRTAP9-9Q9BYP9 154 aa4.27□□□□□ -1.73
CCDC9-201ENST00000221922 KRTAP21-2Q3LI59 83 aa4.26□□□□□ -1.73
CCDC9-201ENST00000221922 MUC5BQ9HC84 5762 aaPredicted RBP4.23□□□□□ -1.73
CCDC9-201ENST00000221922 AHNAKQ09666 5890 aaKnown RBP4.09□□□□□ -1.75
CCDC9-201ENST00000221922 KRTAP5-11Q6L8G4 156 aa4.09□□□□□ -1.76
CCDC9-201ENST00000221922 KRTAP4-12Q9BQ66 201 aa3.79□□□□□ -1.8
CCDC9-201ENST00000221922 KRTAP4-4Q9BYR3 166 aa3.77□□□□□ -1.81
CCDC9-201ENST00000221922 KRTAP21-1Q3LI58 79 aa3.75□□□□□ -1.81
CCDC9-201ENST00000221922 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
CCDC9-201ENST00000221922 PHGR1C9JFL3 82 aa3.51□□□□□ -1.85
CCDC9-201ENST00000221922 MUC19Q7Z5P9 8384 aa3.43□□□□□ -1.86
CCDC9-201ENST00000221922 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 87.9 ms