RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
PTPRA-201ENST00000216877 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
PTPRA-201ENST00000216877 FCGBPQ9Y6R7 5405 aaPredicted RBP4.78□□□□□ -1.64
PTPRA-201ENST00000216877 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
PTPRA-201ENST00000216877 MT1GP13640 62 aa4.73□□□□□ -1.65
PTPRA-201ENST00000216877 KRTAP4-3Q9BYR4 195 aa4.7□□□□□ -1.66
PTPRA-201ENST00000216877 MT1LQ93083 61 aa4.69□□□□□ -1.66
PTPRA-201ENST00000216877 KRTAP4-9Q9BYQ8 210 aa4.65□□□□□ -1.66
PTPRA-201ENST00000216877 MUC12Q9UKN1 5478 aa4.64□□□□□ -1.67
PTPRA-201ENST00000216877 LCE3BQ5TA77 95 aa4.63□□□□□ -1.67
PTPRA-201ENST00000216877 LCE2DQ5TA82 110 aaPredicted RBP4.62□□□□□ -1.67
PTPRA-201ENST00000216877 KRTAP19-6Q3LI70 58 aa4.61□□□□□ -1.67
PTPRA-201ENST00000216877 SYNE2Q8WXH0 6885 aaKnown RBP4.58□□□□□ -1.68
PTPRA-201ENST00000216877 MT1EP04732 61 aa4.57□□□□□ -1.68
PTPRA-201ENST00000216877 KRTAP9-2Q9BYQ4 174 aa4.55□□□□□ -1.68
PTPRA-201ENST00000216877 PRM1P04553 51 aa4.55□□□□□ -1.68
PTPRA-201ENST00000216877 KRTAP9-7A8MTY7 169 aa4.5□□□□□ -1.69
PTPRA-201ENST00000216877 MACF1Q9UPN3 7388 aaKnown RBP4.49□□□□□ -1.69
PTPRA-201ENST00000216877 SPRR2EP22531 72 aa4.42□□□□□ -1.7
PTPRA-201ENST00000216877 SPRR2BP35325 72 aa4.42□□□□□ -1.7
PTPRA-201ENST00000216877 SPRR2AP35326 72 aa4.42□□□□□ -1.7
PTPRA-201ENST00000216877 KRTAP19-4Q3LI73 84 aa4.38□□□□□ -1.71
PTPRA-201ENST00000216877 LCE3DQ9BYE3 92 aa4.38□□□□□ -1.71
PTPRA-201ENST00000216877 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
PTPRA-201ENST00000216877 KRTAP19-3Q7Z4W3 81 aa4.33□□□□□ -1.72
PTPRA-201ENST00000216877 MUC19Q7Z5P9 8384 aa4.32□□□□□ -1.72
PTPRA-201ENST00000216877 LCE1AQ5T7P2 110 aa4.3□□□□□ -1.72
PTPRA-201ENST00000216877 LCE1EQ5T753 118 aa4.29□□□□□ -1.72
PTPRA-201ENST00000216877 MT1MQ8N339 61 aa4.27□□□□□ -1.73
PTPRA-201ENST00000216877 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
PTPRA-201ENST00000216877 KRTAP9-6A0A140TA67 174 aa4.22□□□□□ -1.73
PTPRA-201ENST00000216877 SPRR2DP22532 72 aa4.21□□□□□ -1.73
PTPRA-201ENST00000216877 MDN1Q9NU22 5596 aa4.2□□□□□ -1.74
PTPRA-201ENST00000216877 KRTAP5-5Q701N2 237 aaPredicted RBP4.17□□□□□ -1.74
PTPRA-201ENST00000216877 KRTAP5-9P26371 169 aa4.16□□□□□ -1.74
PTPRA-201ENST00000216877 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
PTPRA-201ENST00000216877 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.76
PTPRA-201ENST00000216877 LCE5AQ5TCM9 118 aa4.08□□□□□ -1.76
PTPRA-201ENST00000216877 MT1AP04731 61 aa4.06□□□□□ -1.76
PTPRA-201ENST00000216877 KRTAP2-2Q9BYT5 123 aa4.04□□□□□ -1.76
PTPRA-201ENST00000216877 LCE1DQ5T752 114 aa4□□□□□ -1.77
PTPRA-201ENST00000216877 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.97□□□□□ -1.77
PTPRA-201ENST00000216877 MT4P47944 62 aa3.94□□□□□ -1.78
PTPRA-201ENST00000216877 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
PTPRA-201ENST00000216877 NEBP20929 6669 aa3.72□□□□□ -1.81
PTPRA-201ENST00000216877 MT3P25713 68 aa3.61□□□□□ -1.83
PTPRA-201ENST00000216877 KRTAP5-4Q6L8H1 288 aa3.61□□□□□ -1.83
PTPRA-201ENST00000216877 KRTAP9-4Q9BYQ2 154 aa3.58□□□□□ -1.84
PTPRA-201ENST00000216877 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
PTPRA-201ENST00000216877 KRTAP20-1Q3LI63 56 aa3.48□□□□□ -1.85
PTPRA-201ENST00000216877 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
PTPRA-201ENST00000216877 KRTAP4-11Q9BYQ6 195 aa3.46□□□□□ -1.85
PTPRA-201ENST00000216877 KRTAP5-2Q701N4 177 aa3.36□□□□□ -1.87
PTPRA-201ENST00000216877 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
PTPRA-201ENST00000216877 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
PTPRA-201ENST00000216877 LCE4AQ5TA78 99 aa3.26□□□□□ -1.89
PTPRA-201ENST00000216877 KRTAP20-2Q3LI61 65 aa3.2□□□□□ -1.9
PTPRA-201ENST00000216877 MUC5ACP98088 5654 aa3.19□□□□□ -1.9
PTPRA-201ENST00000216877 GPR98Q8WXG9 6306 aa3.05□□□□□ -1.92
PTPRA-201ENST00000216877 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
PTPRA-201ENST00000216877 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
PTPRA-201ENST00000216877 KRTAP5-7Q6L8G8 165 aa2.82□□□□□ -1.96
PTPRA-201ENST00000216877 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
PTPRA-201ENST00000216877 AHNAK2Q8IVF2 5795 aa2.81□□□□□ -1.96
PTPRA-201ENST00000216877 KRTAP4-12Q9BQ66 201 aa2.76□□□□□ -1.97
PTPRA-201ENST00000216877 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
PTPRA-201ENST00000216877 KRTAP4-2Q9BYR5 136 aa2.76□□□□□ -1.97
PTPRA-201ENST00000216877 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
PTPRA-201ENST00000216877 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
PTPRA-201ENST00000216877 KRTAP9-9Q9BYP9 154 aa2.66□□□□□ -1.98
PTPRA-201ENST00000216877 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
PTPRA-201ENST00000216877 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
PTPRA-201ENST00000216877 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
PTPRA-201ENST00000216877 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
PTPRA-201ENST00000216877 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.04
PTPRA-201ENST00000216877 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
PTPRA-201ENST00000216877 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 44.9 ms