RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 KLKP1Q107X0 134 aa4.93□□□□□ -1.62
SCN1A-222ENST00000642141 Q8N9L7 120 aa4.93□□□□□ -1.62
SCN1A-222ENST00000642141 IGKV2D-30A0A075B6S6 120 aa4.92□□□□□ -1.62
SCN1A-222ENST00000642141 BPY2O14599 106 aa4.92□□□□□ -1.62
SCN1A-222ENST00000642141 IGKV2-30P06310 120 aa4.92□□□□□ -1.62
SCN1A-222ENST00000642141 Q5W150 140 aa4.91□□□□□ -1.62
SCN1A-222ENST00000642141 A0A087WVE0 104 aa4.9□□□□□ -1.63
SCN1A-222ENST00000642141 H1FX-AS1Q4G0G2 97 aa4.9□□□□□ -1.63
SCN1A-222ENST00000642141 CASC2Q6XLA1 102 aa4.87□□□□□ -1.63
SCN1A-222ENST00000642141 KRTAP4-8A0A0G2JLE6 195 aa4.86□□□□□ -1.63
SCN1A-222ENST00000642141 HCG22E2RYF7 251 aa4.86□□□□□ -1.63
SCN1A-222ENST00000642141 C4orf26Q17RF5 130 aa4.85□□□□□ -1.63
SCN1A-222ENST00000642141 C20orf197Q8N268 126 aa4.85□□□□□ -1.63
SCN1A-222ENST00000642141 SERP1Q9Y6X1 66 aa4.85□□□□□ -1.63
SCN1A-222ENST00000642141 C7orf65Q6ZTY9 151 aa4.84□□□□□ -1.63
SCN1A-222ENST00000642141 H7BZZ5 65 aa4.83□□□□□ -1.64
SCN1A-222ENST00000642141 OCR1Q9BZK8 76 aa4.82□□□□□ -1.64
SCN1A-222ENST00000642141 KRTAP19-6Q3LI70 58 aa4.81□□□□□ -1.64
SCN1A-222ENST00000642141 C5orf47Q569G3 176 aa4.81□□□□□ -1.64
SCN1A-222ENST00000642141 MACF1Q9UPN3 7388 aaKnown RBP4.8□□□□□ -1.64
SCN1A-222ENST00000642141 H3BPC8 53 aa4.79□□□□□ -1.64
SCN1A-222ENST00000642141 SMIM26A0A096LP01 95 aa4.78□□□□□ -1.64
SCN1A-222ENST00000642141 SYNE2Q8WXH0 6885 aaKnown RBP4.76□□□□□ -1.65
SCN1A-222ENST00000642141 CYSTM1Q9H1C7 97 aa4.76□□□□□ -1.65
SCN1A-222ENST00000642141 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
SCN1A-222ENST00000642141 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
SCN1A-222ENST00000642141 C1orf64Q8NEQ6 169 aa4.73□□□□□ -1.65
SCN1A-222ENST00000642141 MP68P56378 58 aa4.72□□□□□ -1.65
SCN1A-222ENST00000642141 SNURFQ9Y675 71 aa4.72□□□□□ -1.65
SCN1A-222ENST00000642141 S4R3F8 94 aa4.72□□□□□ -1.65
SCN1A-222ENST00000642141 LCA10Q71F78 164 aa4.7□□□□□ -1.66
SCN1A-222ENST00000642141 KRTAP4-7Q9BYR0 210 aa4.7□□□□□ -1.66
SCN1A-222ENST00000642141 TP53AIP1Q9HCN2 124 aa4.7□□□□□ -1.66
SCN1A-222ENST00000642141 SPANXA2-OT1Q8N9U9 137 aa4.69□□□□□ -1.66
SCN1A-222ENST00000642141 CYP4F30PQ9H0H9 118 aa4.69□□□□□ -1.66
SCN1A-222ENST00000642141 CSAG1Q6PB30 78 aa4.68□□□□□ -1.66
SCN1A-222ENST00000642141 V9GYY9 64 aa4.67□□□□□ -1.66
SCN1A-222ENST00000642141 MT1BP07438 61 aa4.63□□□□□ -1.67
SCN1A-222ENST00000642141 TRAV22A0A0B4J277 110 aa4.62□□□□□ -1.67
SCN1A-222ENST00000642141 Q1T7F1 81 aa4.62□□□□□ -1.67
SCN1A-222ENST00000642141 KRTAP6-3Q3LI67 103 aa4.62□□□□□ -1.67
SCN1A-222ENST00000642141 Q5VV11 94 aa4.62□□□□□ -1.67
SCN1A-222ENST00000642141 A6NN06 94 aa4.61□□□□□ -1.67
SCN1A-222ENST00000642141 SPRR2GQ9BYE4 73 aa4.6□□□□□ -1.67
SCN1A-222ENST00000642141 PRO0628Q9UI54 55 aa4.6□□□□□ -1.67
SCN1A-222ENST00000642141 H0Y9P7 68 aa4.59□□□□□ -1.67
SCN1A-222ENST00000642141 LINC00208Q96KT6 92 aa4.59□□□□□ -1.67
SCN1A-222ENST00000642141 KRTAP4-9Q9BYQ8 210 aa4.58□□□□□ -1.68
SCN1A-222ENST00000642141 KRTAP19-8Q3LI54 63 aa4.57□□□□□ -1.68
SCN1A-222ENST00000642141 LCE4AQ5TA78 99 aa4.55□□□□□ -1.68
SCN1A-222ENST00000642141 LOC101927531A0A1B0GV80 90 aa4.54□□□□□ -1.68
SCN1A-222ENST00000642141 KRTAP10-5P60370 271 aa4.52□□□□□ -1.69
SCN1A-222ENST00000642141 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
SCN1A-222ENST00000642141 MUC12Q9UKN1 5478 aa4.48□□□□□ -1.69
SCN1A-222ENST00000642141 NEBP20929 6669 aa4.47□□□□□ -1.69
SCN1A-222ENST00000642141 KRTAP19-4Q3LI73 84 aa4.47□□□□□ -1.69
SCN1A-222ENST00000642141 CRIPTQ9P021 101 aa4.47□□□□□ -1.69
SCN1A-222ENST00000642141 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.7
SCN1A-222ENST00000642141 BRK1Q8WUW1 75 aa4.45□□□□□ -1.7
SCN1A-222ENST00000642141 ACYP2P14621 99 aa4.43□□□□□ -1.7
SCN1A-222ENST00000642141 COA5Q86WW8 74 aa4.43□□□□□ -1.7
SCN1A-222ENST00000642141 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
SCN1A-222ENST00000642141 LINC01558Q9Y6Z2 57 aa4.42□□□□□ -1.7
SCN1A-222ENST00000642141 MDN1Q9NU22 5596 aa4.4□□□□□ -1.7
SCN1A-222ENST00000642141 H0YAA0 97 aa4.4□□□□□ -1.71
SCN1A-222ENST00000642141 A8MUN3 132 aa4.39□□□□□ -1.71
SCN1A-222ENST00000642141 KMT2DO14686 5537 aa4.39□□□□□ -1.71
SCN1A-222ENST00000642141 H3BS24 57 aa4.38□□□□□ -1.71
SCN1A-222ENST00000642141 PSPHP1O15172 72 aa4.36□□□□□ -1.71
SCN1A-222ENST00000642141 KRTAP5-9P26371 169 aa4.36□□□□□ -1.71
SCN1A-222ENST00000642141 DMAC1Q96GE9 116 aa4.36□□□□□ -1.71
SCN1A-222ENST00000642141 PRR15LQ9BU68 103 aa4.36□□□□□ -1.71
SCN1A-222ENST00000642141 CHKB-CPT1BH3BT56 60 aa4.35□□□□□ -1.71
SCN1A-222ENST00000642141 P0C880 135 aa4.35□□□□□ -1.71
SCN1A-222ENST00000642141 KRTAP20-1Q3LI63 56 aa4.34□□□□□ -1.71
SCN1A-222ENST00000642141 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.71
SCN1A-222ENST00000642141 MT1XP80297 61 aa4.33□□□□□ -1.72
SCN1A-222ENST00000642141 PLAC4Q8WY50 150 aa4.33□□□□□ -1.72
SCN1A-222ENST00000642141 CDC42SE1Q9NRR8 79 aa4.33□□□□□ -1.72
SCN1A-222ENST00000642141 A6NED7 52 aa4.31□□□□□ -1.72
SCN1A-222ENST00000642141 R4GN34 69 aa4.31□□□□□ -1.72
SCN1A-222ENST00000642141 PRO2289Q9P1D8 64 aa4.3□□□□□ -1.72
SCN1A-222ENST00000642141 M0QZ58 72 aa4.29□□□□□ -1.72
SCN1A-222ENST00000642141 PMAIP1Q13794 54 aa4.29□□□□□ -1.72
SCN1A-222ENST00000642141 LINC01554Q52M75 96 aa4.29□□□□□ -1.72
SCN1A-222ENST00000642141 SPTSSBQ8NFR3 76 aa4.29□□□□□ -1.72
SCN1A-222ENST00000642141 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
SCN1A-222ENST00000642141 SPRR2EP22531 72 aa4.24□□□□□ -1.73
SCN1A-222ENST00000642141 SPRR2BP35325 72 aa4.24□□□□□ -1.73
SCN1A-222ENST00000642141 SPRR2AP35326 72 aa4.24□□□□□ -1.73
SCN1A-222ENST00000642141 KRTAP8-1Q8IUC2 63 aa4.24□□□□□ -1.73
SCN1A-222ENST00000642141 A0A1B0GU69 56 aa4.23□□□□□ -1.73
SCN1A-222ENST00000642141 UQCR11O14957 56 aa4.21□□□□□ -1.74
SCN1A-222ENST00000642141 KTN1-AS1Q86SY8 53 aa4.21□□□□□ -1.74
SCN1A-222ENST00000642141 KRTAP2-3P0C7H8 128 aa4.2□□□□□ -1.74
SCN1A-222ENST00000642141 SEC61GP60059 68 aa4.2□□□□□ -1.74
SCN1A-222ENST00000642141 SPATA8Q6RVD6 105 aa4.2□□□□□ -1.74
SCN1A-222ENST00000642141 KRTAP2-4Q9BYR9 128 aa4.2□□□□□ -1.74
SCN1A-222ENST00000642141 KRTAP12-2P59991 146 aa4.18□□□□□ -1.74
SCN1A-222ENST00000642141 LCE1AQ5T7P2 110 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms