RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LINC00472Q9H8W2 130 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 A8MU10 97 aa2.5□□□□□ -2.01
LIG3-211ENST00000588713 KRTAP10-8P60410 259 aa2.5□□□□□ -2.01
LIG3-211ENST00000588713 FCGBPQ9Y6R7 5405 aaPredicted RBP2.5□□□□□ -2.01
LIG3-211ENST00000588713 A0A087X002 238 aa2.49□□□□□ -2.01
LIG3-211ENST00000588713 PRLHP81277 87 aa2.48□□□□□ -2.01
LIG3-211ENST00000588713 MUC17Q685J3 4493 aa2.47□□□□□ -2.01
LIG3-211ENST00000588713 IGKV2-24A0A0C4DH68 120 aa2.47□□□□□ -2.01
LIG3-211ENST00000588713 DEFB116Q30KQ4 102 aa2.47□□□□□ -2.01
LIG3-211ENST00000588713 A0A096LNI7 61 aa2.46□□□□□ -2.02
LIG3-211ENST00000588713 HRES1P13985 223 aa2.46□□□□□ -2.02
LIG3-211ENST00000588713 C14orf177Q52M58 125 aa2.46□□□□□ -2.02
LIG3-211ENST00000588713 Q96NJ1 140 aa2.46□□□□□ -2.02
LIG3-211ENST00000588713 C8orf17Q9NRJ1 99 aa2.46□□□□□ -2.02
LIG3-211ENST00000588713 A0A0G2JQZ4 141 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 A0A1B0GVX0 72 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 A0A1W2PNN7 141 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 C8orf87E5RJ46 101 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 SPINK7P58062 85 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 PCOTHQ58A44 107 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 SPAG11AQ6PDA7 123 aa2.45□□□□□ -2.02
LIG3-211ENST00000588713 MRPL34Q9BQ48 92 aaKnown RBP2.45□□□□□ -2.02
LIG3-211ENST00000588713 LINC00483Q53H64 154 aa2.44□□□□□ -2.02
LIG3-211ENST00000588713 KRTAP13-1Q8IUC0 172 aa2.44□□□□□ -2.02
LIG3-211ENST00000588713 ZNF706Q9Y5V0 76 aaPredicted RBP2.44□□□□□ -2.02
LIG3-211ENST00000588713 LINC00313P59037 77 aa2.43□□□□□ -2.02
LIG3-211ENST00000588713 DMAC1Q96GE9 116 aa2.43□□□□□ -2.02
LIG3-211ENST00000588713 KRTAP6-3Q3LI67 103 aa2.42□□□□□ -2.02
LIG3-211ENST00000588713 KRTAP13-3Q3SY46 172 aa2.42□□□□□ -2.02
LIG3-211ENST00000588713 ACYP2P14621 99 aa2.41□□□□□ -2.02
LIG3-211ENST00000588713 KRTAP10-6P60371 365 aaPredicted RBP2.41□□□□□ -2.02
LIG3-211ENST00000588713 LINC01554Q52M75 96 aa2.41□□□□□ -2.02
LIG3-211ENST00000588713 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
LIG3-211ENST00000588713 IGHV6-1A0A0B4J1U7 121 aa2.4□□□□□ -2.03
LIG3-211ENST00000588713 CHTF8P0CG12 524 aa2.4□□□□□ -2.03
LIG3-211ENST00000588713 SPATA8Q6RVD6 105 aa2.4□□□□□ -2.03
LIG3-211ENST00000588713 PRR26Q8N8Z3 221 aa2.4□□□□□ -2.03
LIG3-211ENST00000588713 A0A1B0GU69 56 aa2.39□□□□□ -2.03
LIG3-211ENST00000588713 MT1HP80294 61 aa2.39□□□□□ -2.03
LIG3-211ENST00000588713 SPINK6Q6UWN8 80 aa2.39□□□□□ -2.03
LIG3-211ENST00000588713 KRTAP11-1Q8IUC1 163 aa2.39□□□□□ -2.03
LIG3-211ENST00000588713 IGLV9-49A0A0B4J1Y8 123 aa2.38□□□□□ -2.03
LIG3-211ENST00000588713 UQCR11O14957 56 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 MIR22HGQ0VDD5 57 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 SPACA4Q8TDM5 124 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 PRAC1Q96KF2 57 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 RETNLBQ9BQ08 111 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 PSORS1C2Q9UIG4 136 aa2.37□□□□□ -2.03
LIG3-211ENST00000588713 MUC12Q9UKN1 5478 aa2.36□□□□□ -2.03
LIG3-211ENST00000588713 M0R2T5 61 aa2.36□□□□□ -2.03
LIG3-211ENST00000588713 IGKV2-30P06310 120 aa2.36□□□□□ -2.03
LIG3-211ENST00000588713 Q5W150 140 aa2.36□□□□□ -2.03
LIG3-211ENST00000588713 KRTAP4-1Q9BYQ7 146 aa2.35□□□□□ -2.03
LIG3-211ENST00000588713 LCE1AQ5T7P2 110 aa2.34□□□□□ -2.03
LIG3-211ENST00000588713 ADM2Q7Z4H4 148 aa2.34□□□□□ -2.03
LIG3-211ENST00000588713 ZNF861PO60384 105 aa2.33□□□□□ -2.04
LIG3-211ENST00000588713 IGLV7-43P04211 117 aa2.33□□□□□ -2.04
LIG3-211ENST00000588713 NOTCH2NLQ7Z3S9 236 aa2.33□□□□□ -2.04
LIG3-211ENST00000588713 KMT2DO14686 5537 aa2.32□□□□□ -2.04
LIG3-211ENST00000588713 IGKV2D-30A0A075B6S6 120 aa2.32□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP10-7P60409 375 aaPredicted RBP2.32□□□□□ -2.04
LIG3-211ENST00000588713 CSAG1Q6PB30 78 aa2.31□□□□□ -2.04
LIG3-211ENST00000588713 SSBP3-AS1Q7Z2R9 100 aa2.31□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP16-1A8MUX0 517 aa2.3□□□□□ -2.04
LIG3-211ENST00000588713 TPRXLQ17RH7 258 aa2.29□□□□□ -2.04
LIG3-211ENST00000588713 A8MUU9 505 aa2.28□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP2-3P0C7H8 128 aa2.28□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP19-2Q3LHN2 52 aa2.28□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP2-4Q9BYR9 128 aa2.28□□□□□ -2.04
LIG3-211ENST00000588713 KRTAP25-1Q3LHN0 102 aa2.27□□□□□ -2.05
LIG3-211ENST00000588713 ANAPC11Q9NYG5 84 aa2.26□□□□□ -2.05
LIG3-211ENST00000588713 H0YAA0 97 aa2.25□□□□□ -2.05
LIG3-211ENST00000588713 SEC61BP60468 96 aaKnown RBP2.25□□□□□ -2.05
LIG3-211ENST00000588713 KRTAP5-11Q6L8G4 156 aa2.25□□□□□ -2.05
LIG3-211ENST00000588713 KRTAP1-4P0C5Y4 121 aa2.24□□□□□ -2.05
LIG3-211ENST00000588713 ROMO1P60602 79 aa2.24□□□□□ -2.05
LIG3-211ENST00000588713 RPS29P62273 56 aaKnown RBP2.23□□□□□ -2.05
LIG3-211ENST00000588713 H1FX-AS1Q4G0G2 97 aa2.23□□□□□ -2.05
LIG3-211ENST00000588713 K7ERS5 55 aa2.22□□□□□ -2.05
LIG3-211ENST00000588713 KRTAP13-2Q52LG2 175 aa2.22□□□□□ -2.05
LIG3-211ENST00000588713 LINC00304Q8N9R0 145 aa2.22□□□□□ -2.05
LIG3-211ENST00000588713 KRTAP2-2Q9BYT5 123 aa2.22□□□□□ -2.05
LIG3-211ENST00000588713 A0A1B0GU33 70 aa2.21□□□□□ -2.06
LIG3-211ENST00000588713 COX6B2Q6YFQ2 88 aa2.21□□□□□ -2.06
LIG3-211ENST00000588713 MDN1Q9NU22 5596 aa2.2□□□□□ -2.06
LIG3-211ENST00000588713 SPINK1P00995 79 aa2.2□□□□□ -2.06
LIG3-211ENST00000588713 KRTAP19-6Q3LI70 58 aa2.2□□□□□ -2.06
LIG3-211ENST00000588713 TYMSOSQ8TAI1 123 aa2.19□□□□□ -2.06
LIG3-211ENST00000588713 FLGP20930 4061 aaPredicted RBP2.19□□□□□ -2.06
LIG3-211ENST00000588713 C20orf166-AS1Q96NR2 134 aa2.18□□□□□ -2.06
LIG3-211ENST00000588713 KRTAP2-1Q9BYU5 128 aa2.18□□□□□ -2.06
LIG3-211ENST00000588713 A0A0A0MQY5 61 aa2.17□□□□□ -2.06
LIG3-211ENST00000588713 P0C880 135 aa2.15□□□□□ -2.07
LIG3-211ENST00000588713 LCE1EQ5T753 118 aa2.15□□□□□ -2.07
LIG3-211ENST00000588713 RPL37P61927 97 aaKnown RBP2.14□□□□□ -2.07
LIG3-211ENST00000588713 SPINT4Q6UDR6 99 aa2.11□□□□□ -2.07
LIG3-211ENST00000588713 MT2AP02795 61 aa2.1□□□□□ -2.07
LIG3-211ENST00000588713 MT1FP04733 61 aa2.1□□□□□ -2.07
LIG3-211ENST00000588713 KRTAP5-9P26371 169 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms