RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 DEFB114Q30KQ6 69 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 MINOS1Q5TGZ0 78 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 BAGE3Q86Y29 109 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 MUSTN1Q8IVN3 82 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 GVQW2A0A096LPI5 108 aaPredicted RBP1.27□□□□□ -2.21
VPS35-209ENST00000568642 ATP5EP2Q5VTU8 51 aa1.27□□□□□ -2.21
VPS35-209ENST00000568642 FLGP20930 4061 aaPredicted RBP1.27□□□□□ -2.21
VPS35-209ENST00000568642 CTXND1A0A1B0GTU2 59 aa1.26□□□□□ -2.21
VPS35-209ENST00000568642 CAV3P56539 151 aa1.26□□□□□ -2.21
VPS35-209ENST00000568642 C10orf113Q5VZT2 155 aa1.26□□□□□ -2.21
VPS35-209ENST00000568642 UNQ6190/PRO20217Q6UXQ8 127 aa1.26□□□□□ -2.21
VPS35-209ENST00000568642 H0Y9P7 68 aa1.25□□□□□ -2.21
VPS35-209ENST00000568642 MGPP08493 103 aa1.25□□□□□ -2.21
VPS35-209ENST00000568642 SPART-AS1P0CW21 52 aa1.25□□□□□ -2.21
VPS35-209ENST00000568642 LCE3DQ9BYE3 92 aa1.25□□□□□ -2.21
VPS35-209ENST00000568642 KRTAP12-1P59990 96 aa1.24□□□□□ -2.21
VPS35-209ENST00000568642 TMEM263Q8WUH6 116 aaKnown RBP1.24□□□□□ -2.21
VPS35-209ENST00000568642 TRAV21A0A0B4J279 112 aa1.23□□□□□ -2.21
VPS35-209ENST00000568642 ACYP2P14621 99 aa1.23□□□□□ -2.21
VPS35-209ENST00000568642 Q6ZQY7 126 aa1.23□□□□□ -2.21
VPS35-209ENST00000568642 GAFA1Q96PS6 74 aa1.23□□□□□ -2.21
VPS35-209ENST00000568642 SPINK6Q6UWN8 80 aa1.22□□□□□ -2.21
VPS35-209ENST00000568642 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.22□□□□□ -2.21
VPS35-209ENST00000568642 SPRR2FQ96RM1 72 aa1.22□□□□□ -2.21
VPS35-209ENST00000568642 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
VPS35-209ENST00000568642 A0A1B0GUT8 65 aa1.21□□□□□ -2.22
VPS35-209ENST00000568642 Q6ZRX8 168 aa1.21□□□□□ -2.22
VPS35-209ENST00000568642 PLAC4Q8WY50 150 aa1.21□□□□□ -2.22
VPS35-209ENST00000568642 H3BVH4 76 aa1.2□□□□□ -2.22
VPS35-209ENST00000568642 RPL37P61927 97 aaKnown RBP1.2□□□□□ -2.22
VPS35-209ENST00000568642 COX17Q14061 63 aa1.2□□□□□ -2.22
VPS35-209ENST00000568642 NREPQ16612 68 aa1.2□□□□□ -2.22
VPS35-209ENST00000568642 COX6B2Q6YFQ2 88 aa1.2□□□□□ -2.22
VPS35-209ENST00000568642 MUC5ACP98088 5654 aa1.19□□□□□ -2.22
VPS35-209ENST00000568642 MT4P47944 62 aa1.19□□□□□ -2.22
VPS35-209ENST00000568642 SMIM4Q8WVI0 70 aa1.19□□□□□ -2.22
VPS35-209ENST00000568642 LINC01549A6NIU2 74 aa1.18□□□□□ -2.22
VPS35-209ENST00000568642 KRTAP12-4P60329 112 aa1.18□□□□□ -2.22
VPS35-209ENST00000568642 ATXN8Q156A1 80 aa1.18□□□□□ -2.22
VPS35-209ENST00000568642 FAM103A1Q9BTL3 118 aaKnown RBP1.18□□□□□ -2.22
VPS35-209ENST00000568642 TRBV30A0A0K0K1B3 111 aa1.17□□□□□ -2.22
VPS35-209ENST00000568642 K7EMI3 77 aa1.17□□□□□ -2.22
VPS35-209ENST00000568642 MT2AP02795 61 aa1.17□□□□□ -2.22
VPS35-209ENST00000568642 MT1FP04733 61 aa1.17□□□□□ -2.22
VPS35-209ENST00000568642 SMIM11BQ8TCY0 68 aa1.17□□□□□ -2.22
VPS35-209ENST00000568642 TRBV6-1A0A0K0K1D8 114 aa1.16□□□□□ -2.22
VPS35-209ENST00000568642 LINC00575Q6W349 94 aa1.15□□□□□ -2.23
VPS35-209ENST00000568642 A0A1B0GU69 56 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 H3BUA1 57 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 DEFB130BP0DP73 79 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 DEFB130AP0DP74 79 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 ENHOQ6UWT2 76 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 C10orf95Q9H7T3 257 aa1.14□□□□□ -2.23
VPS35-209ENST00000568642 SNRPGP15A8MWD9 76 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 I3L2K1 104 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 KRTAP13-1Q8IUC0 172 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 USMG5Q96IX5 58 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 FXYD6Q9H0Q3 95 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 GNG13Q9P2W3 67 aa1.13□□□□□ -2.23
VPS35-209ENST00000568642 COX7BP24311 80 aa1.12□□□□□ -2.23
VPS35-209ENST00000568642 LEAP2Q969E1 77 aa1.12□□□□□ -2.23
VPS35-209ENST00000568642 NCR3O14931 201 aa1.11□□□□□ -2.23
VPS35-209ENST00000568642 DEFB131AP59861 70 aa1.11□□□□□ -2.23
VPS35-209ENST00000568642 KRTAP21-2Q3LI59 83 aa1.11□□□□□ -2.23
VPS35-209ENST00000568642 SSBP3-AS1Q7Z2R9 100 aa1.11□□□□□ -2.23
VPS35-209ENST00000568642 A0A096LPF7 62 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 H3BNG1 76 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 NDUFB1O75438 58 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 SPINK13Q1W4C9 94 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 WFDC10BQ8IUB3 73 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 CRIPTQ9P021 101 aa1.1□□□□□ -2.23
VPS35-209ENST00000568642 NDUFA4O00483 81 aa1.09□□□□□ -2.23
VPS35-209ENST00000568642 APELAP0DMC3 54 aa1.09□□□□□ -2.23
VPS35-209ENST00000568642 IGIPA6NJ69 53 aa1.08□□□□□ -2.24
VPS35-209ENST00000568642 CPSF4LA6NMK7 179 aaKnown RBP1.08□□□□□ -2.24
VPS35-209ENST00000568642 KCNQ1DNQ9H478 68 aa1.08□□□□□ -2.24
VPS35-209ENST00000568642 NDUFA3O95167 84 aa1.07□□□□□ -2.24
VPS35-209ENST00000568642 PRH1P02810 166 aa1.06□□□□□ -2.24
VPS35-209ENST00000568642 ANGP03950 147 aaKnown RBP1.05□□□□□ -2.24
VPS35-209ENST00000568642 LINC01556Q5JQF7 62 aa1.05□□□□□ -2.24
VPS35-209ENST00000568642 KRTAP8-1Q8IUC2 63 aa1.04□□□□□ -2.24
VPS35-209ENST00000568642 RHPN1-AS1Q9BWJ2 59 aa1.04□□□□□ -2.24
VPS35-209ENST00000568642 K7EQZ3 153 aa1.03□□□□□ -2.24
VPS35-209ENST00000568642 CRIP1P50238 77 aa1.02□□□□□ -2.25
VPS35-209ENST00000568642 SPINK9Q5DT21 86 aa1.02□□□□□ -2.25
VPS35-209ENST00000568642 RPS27LQ71UM5 84 aaKnown RBP1.02□□□□□ -2.25
VPS35-209ENST00000568642 NOP10Q9NPE3 64 aaKnown RBP1.02□□□□□ -2.25
VPS35-209ENST00000568642 CMC2Q9NRP2 79 aa1.02□□□□□ -2.25
VPS35-209ENST00000568642 TIMM8BQ9Y5J9 83 aaPredicted RBP1.02□□□□□ -2.25
VPS35-209ENST00000568642 I3L3M4 83 aa1.01□□□□□ -2.25
VPS35-209ENST00000568642 UBL5Q9BZL1 73 aa1.01□□□□□ -2.25
VPS35-209ENST00000568642 A0A0D9SG42 100 aa1□□□□□ -2.25
VPS35-209ENST00000568642 HTN1P15515 57 aa1□□□□□ -2.25
VPS35-209ENST00000568642 FCER1GP30273 86 aa1□□□□□ -2.25
VPS35-209ENST00000568642 COX6A2Q02221 97 aa1□□□□□ -2.25
VPS35-209ENST00000568642 TP53AIP1Q9HCN2 124 aa1□□□□□ -2.25
VPS35-209ENST00000568642 ETDCA0A1B0GVM5 59 aa0.99□□□□□ -2.25
VPS35-209ENST00000568642 H0YAA0 97 aa0.99□□□□□ -2.25
VPS35-209ENST00000568642 ARL14EPLP0DKL9 152 aa0.99□□□□□ -2.25
VPS35-209ENST00000568642 FXYD6P3P58550 94 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms