RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.33□□□□□ -2.62
LSM6-205ENST00000507449 KIF1AQ12756 1690 aa-1.33□□□□□ -2.62
LSM6-205ENST00000507449 PLCH1Q4KWH8 1693 aa-1.33□□□□□ -2.62
LSM6-205ENST00000507449 URB2Q14146 1524 aaKnown RBP-1.34□□□□□ -2.62
LSM6-205ENST00000507449 PVALEFA0A1B0GWK0 134 aa-1.34□□□□□ -2.62
LSM6-205ENST00000507449 H3BUA1 57 aa-1.34□□□□□ -2.62
LSM6-205ENST00000507449 DEFB133Q30KQ1 61 aa-1.34□□□□□ -2.62
LSM6-205ENST00000507449 THOC2Q8NI27 1593 aaKnown RBP-1.34□□□□□ -2.62
LSM6-205ENST00000507449 UMAD1C9J7I0 102 aa-1.35□□□□□ -2.63
LSM6-205ENST00000507449 TDRG1Q3Y452 100 aa-1.35□□□□□ -2.63
LSM6-205ENST00000507449 BVES-AS1Q5T3Y7 98 aa-1.35□□□□□ -2.63
LSM6-205ENST00000507449 ARHGAP35Q9NRY4 1499 aa-1.36□□□□□ -2.63
LSM6-205ENST00000507449 DIP2BQ9P265 1576 aa-1.36□□□□□ -2.63
LSM6-205ENST00000507449 KIF14Q15058 1648 aa-1.37□□□□□ -2.63
LSM6-205ENST00000507449 CD163L1Q9NR16 1453 aa-1.37□□□□□ -2.63
LSM6-205ENST00000507449 TTC37Q6PGP7 1564 aa-1.37□□□□□ -2.63
LSM6-205ENST00000507449 NDUFA4O00483 81 aa-1.37□□□□□ -2.63
LSM6-205ENST00000507449 RPS27P42677 84 aaKnown RBP-1.37□□□□□ -2.63
LSM6-205ENST00000507449 CLASP1Q7Z460 1538 aa-1.37□□□□□ -2.63
LSM6-205ENST00000507449 SFTA3P0C7M3 94 aa-1.38□□□□□ -2.63
LSM6-205ENST00000507449 HTN1P15515 57 aa-1.38□□□□□ -2.63
LSM6-205ENST00000507449 DEFB131BA0A096LNP1 70 aa-1.39□□□□□ -2.63
LSM6-205ENST00000507449 MRPL33O75394 65 aaKnown RBP-1.39□□□□□ -2.63
LSM6-205ENST00000507449 MED14O60244 1454 aa-1.39□□□□□ -2.63
LSM6-205ENST00000507449 UACAQ9BZF9 1416 aa-1.4□□□□□ -2.63
LSM6-205ENST00000507449 ARFGEF2Q9Y6D5 1785 aa-1.4□□□□□ -2.63
LSM6-205ENST00000507449 LRRIQ1Q96JM4 1722 aa-1.4□□□□□ -2.63
LSM6-205ENST00000507449 MAP3K4Q9Y6R4 1608 aa-1.4□□□□□ -2.63
LSM6-205ENST00000507449 PPLO60437 1756 aa-1.41□□□□□ -2.63
LSM6-205ENST00000507449 CCDC88BA6NC98 1476 aa-1.41□□□□□ -2.63
LSM6-205ENST00000507449 FCER1GP30273 86 aa-1.41□□□□□ -2.64
LSM6-205ENST00000507449 RPS27LQ71UM5 84 aaKnown RBP-1.41□□□□□ -2.64
LSM6-205ENST00000507449 RICTORQ6R327 1708 aa-1.41□□□□□ -2.64
LSM6-205ENST00000507449 LMO7Q8WWI1 1683 aa-1.42□□□□□ -2.64
LSM6-205ENST00000507449 POLR2KP53803 58 aaKnown RBP-1.42□□□□□ -2.64
LSM6-205ENST00000507449 MINOS1Q5TGZ0 78 aa-1.42□□□□□ -2.64
LSM6-205ENST00000507449 PREX2Q70Z35 1606 aa-1.42□□□□□ -2.64
LSM6-205ENST00000507449 NREPQ16612 68 aa-1.43□□□□□ -2.64
LSM6-205ENST00000507449 ITSN2Q9NZM3 1697 aa-1.43□□□□□ -2.64
LSM6-205ENST00000507449 KANTRA0A1W2PQU2 76 aa-1.44□□□□□ -2.64
LSM6-205ENST00000507449 NCBP2-AS2Q69YL0 99 aa-1.44□□□□□ -2.64
LSM6-205ENST00000507449 ABRACLQ9P1F3 81 aa-1.44□□□□□ -2.64
LSM6-205ENST00000507449 NRAPQ86VF7 1730 aa-1.44□□□□□ -2.64
LSM6-205ENST00000507449 DDX60LQ5H9U9 1706 aaKnown RBP-1.45□□□□□ -2.64
LSM6-205ENST00000507449 A0A096LNI7 61 aa-1.45□□□□□ -2.64
LSM6-205ENST00000507449 RHPN1-AS1Q9BWJ2 59 aa-1.45□□□□□ -2.64
LSM6-205ENST00000507449 C6orf48Q9UBA6 75 aa-1.45□□□□□ -2.64
LSM6-205ENST00000507449 KAAG1Q9UBP8 84 aa-1.45□□□□□ -2.64
LSM6-205ENST00000507449 KIAA0586Q9BVV6 1533 aa-1.45□□□□□ -2.64
LSM6-205ENST00000507449 CRIP1P50238 77 aa-1.46□□□□□ -2.64
LSM6-205ENST00000507449 ATP5EP2Q5VTU8 51 aa-1.46□□□□□ -2.64
LSM6-205ENST00000507449 UBL5Q9BZL1 73 aa-1.46□□□□□ -2.64
LSM6-205ENST00000507449 NFAT5O94916 1531 aa-1.46□□□□□ -2.64
LSM6-205ENST00000507449 TJP1Q07157 1748 aa-1.46□□□□□ -2.64
LSM6-205ENST00000507449 GLI2P10070 1586 aa-1.47□□□□□ -2.64
LSM6-205ENST00000507449 A0A087WXM4 84 aa-1.47□□□□□ -2.64
LSM6-205ENST00000507449 DEFB121Q5J5C9 76 aa-1.47□□□□□ -2.64
LSM6-205ENST00000507449 LINC01556Q5JQF7 62 aa-1.47□□□□□ -2.64
LSM6-205ENST00000507449 KCNQ1DNQ9H478 68 aa-1.48□□□□□ -2.65
LSM6-205ENST00000507449 SCRIBQ14160 1630 aa-1.48□□□□□ -2.65
LSM6-205ENST00000507449 FAM208AQ9UK61 1670 aaKnown RBP-1.48□□□□□ -2.65
LSM6-205ENST00000507449 RRBP1Q9P2E9 1410 aaKnown RBP-1.49□□□□□ -2.65
LSM6-205ENST00000507449 ITSN1Q15811 1721 aa-1.49□□□□□ -2.65
LSM6-205ENST00000507449 RNF17Q9BXT8 1623 aaKnown RBP-1.49□□□□□ -2.65
LSM6-205ENST00000507449 NHSQ6T4R5 1651 aa-1.49□□□□□ -2.65
LSM6-205ENST00000507449 HFM1A2PYH4 1435 aa-1.5□□□□□ -2.65
LSM6-205ENST00000507449 CCDC180Q9P1Z9 1646 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 SMIM27A0A1W2PRY6 76 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 SMIM13P0DJ93 91 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 WFDC10BQ8IUB3 73 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 ANKARQ7Z5J8 1434 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 C3P01024 1663 aa-1.51□□□□□ -2.65
LSM6-205ENST00000507449 RALGAPBQ86X10 1494 aa-1.52□□□□□ -2.65
LSM6-205ENST00000507449 SMIM2Q9BVW6 85 aa-1.53□□□□□ -2.65
LSM6-205ENST00000507449 ST20Q9HBF5 79 aa-1.53□□□□□ -2.65
LSM6-205ENST00000507449 DUOX2Q9NRD8 1548 aa-1.54□□□□□ -2.66
LSM6-205ENST00000507449 ETDCA0A1B0GVM5 59 aa-1.54□□□□□ -2.66
LSM6-205ENST00000507449 CFAP43Q8NDM7 1665 aa-1.55□□□□□ -2.66
LSM6-205ENST00000507449 MADDQ8WXG6 1647 aa-1.55□□□□□ -2.66
LSM6-205ENST00000507449 DEFB124Q8NES8 71 aa-1.55□□□□□ -2.66
LSM6-205ENST00000507449 TRPM2O94759 1503 aa-1.56□□□□□ -2.66
LSM6-205ENST00000507449 DEFB131AP59861 70 aa-1.56□□□□□ -2.66
LSM6-205ENST00000507449 NMES1Q9C002 83 aa-1.56□□□□□ -2.66
LSM6-205ENST00000507449 MYO5CQ9NQX4 1742 aa-1.57□□□□□ -2.66
LSM6-205ENST00000507449 H3BUT2 72 aa-1.57□□□□□ -2.66
LSM6-205ENST00000507449 ADIRFQ15847 76 aa-1.57□□□□□ -2.66
LSM6-205ENST00000507449 LINC01590Q5TEZ4 76 aa-1.57□□□□□ -2.66
LSM6-205ENST00000507449 ENHOQ6UWT2 76 aa-1.57□□□□□ -2.66
LSM6-205ENST00000507449 INO80Q9ULG1 1556 aaPredicted RBP-1.57□□□□□ -2.66
LSM6-205ENST00000507449 GNG2P59768 71 aa-1.58□□□□□ -2.66
LSM6-205ENST00000507449 KDM5DQ9BY66 1539 aa-1.58□□□□□ -2.66
LSM6-205ENST00000507449 ALS2Q96Q42 1657 aa-1.58□□□□□ -2.66
LSM6-205ENST00000507449 MROH1Q8NDA8 1641 aa-1.58□□□□□ -2.66
LSM6-205ENST00000507449 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.61□□□□□ -2.67
LSM6-205ENST00000507449 APELAP0DMC3 54 aa-1.61□□□□□ -2.67
LSM6-205ENST00000507449 DIP2AQ14689 1571 aa-1.61□□□□□ -2.67
LSM6-205ENST00000507449 MROH2AA6NES4 1674 aa-1.61□□□□□ -2.67
LSM6-205ENST00000507449 HTN3P15516 51 aa-1.62□□□□□ -2.67
LSM6-205ENST00000507449 S100A13Q99584 98 aa-1.62□□□□□ -2.67
LSM6-205ENST00000507449 TOMM7Q9P0U1 55 aa-1.62□□□□□ -2.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms