RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SMIM20Q8N5G0 67 aa6.32□□□□□ -1.4
SQSTM1-208ENST00000485412 NDUFS5O43920 106 aa6.31□□□□□ -1.4
SQSTM1-208ENST00000485412 hDV103S1A0JD37 113 aa6.3□□□□□ -1.4
SQSTM1-208ENST00000485412 TMEM258P61165 79 aa6.3□□□□□ -1.4
SQSTM1-208ENST00000485412 C4orf26Q17RF5 130 aa6.27□□□□□ -1.41
SQSTM1-208ENST00000485412 C20orf197Q8N268 126 aa6.27□□□□□ -1.41
SQSTM1-208ENST00000485412 HCG22E2RYF7 251 aa6.26□□□□□ -1.41
SQSTM1-208ENST00000485412 Q5VV11 94 aa6.26□□□□□ -1.41
SQSTM1-208ENST00000485412 C7orf65Q6ZTY9 151 aa6.26□□□□□ -1.41
SQSTM1-208ENST00000485412 C5orf47Q569G3 176 aa6.25□□□□□ -1.41
SQSTM1-208ENST00000485412 MDN1Q9NU22 5596 aa6.25□□□□□ -1.41
SQSTM1-208ENST00000485412 KRTAP5-9P26371 169 aa6.24□□□□□ -1.41
SQSTM1-208ENST00000485412 RPS28P62857 69 aaKnown RBP6.24□□□□□ -1.41
SQSTM1-208ENST00000485412 KLKP1Q107X0 134 aa6.24□□□□□ -1.41
SQSTM1-208ENST00000485412 H7BZZ5 65 aa6.23□□□□□ -1.41
SQSTM1-208ENST00000485412 OCR1Q9BZK8 76 aa6.23□□□□□ -1.41
SQSTM1-208ENST00000485412 CASC2Q6XLA1 102 aa6.22□□□□□ -1.41
SQSTM1-208ENST00000485412 KRTAP3-1Q9BYR8 98 aa6.22□□□□□ -1.41
SQSTM1-208ENST00000485412 KMT2DO14686 5537 aa6.21□□□□□ -1.41
SQSTM1-208ENST00000485412 KRTAP10-5P60370 271 aa6.2□□□□□ -1.42
SQSTM1-208ENST00000485412 KRTAP19-8Q3LI54 63 aa6.2□□□□□ -1.42
SQSTM1-208ENST00000485412 SNURFQ9Y675 71 aa6.2□□□□□ -1.42
SQSTM1-208ENST00000485412 SPRR2GQ9BYE4 73 aa6.18□□□□□ -1.42
SQSTM1-208ENST00000485412 KRTAP2-3P0C7H8 128 aa6.17□□□□□ -1.42
SQSTM1-208ENST00000485412 KRTAP2-4Q9BYR9 128 aa6.17□□□□□ -1.42
SQSTM1-208ENST00000485412 NDUFC1O43677 76 aa6.15□□□□□ -1.42
SQSTM1-208ENST00000485412 TP53AIP1Q9HCN2 124 aa6.14□□□□□ -1.43
SQSTM1-208ENST00000485412 LCA10Q71F78 164 aa6.13□□□□□ -1.43
SQSTM1-208ENST00000485412 SERP1Q9Y6X1 66 aa6.13□□□□□ -1.43
SQSTM1-208ENST00000485412 S4R3F8 94 aa6.13□□□□□ -1.43
SQSTM1-208ENST00000485412 ATP5EP56381 51 aaPredicted RBP6.11□□□□□ -1.43
SQSTM1-208ENST00000485412 SVIPQ8NHG7 77 aa6.11□□□□□ -1.43
SQSTM1-208ENST00000485412 CSAG1Q6PB30 78 aa6.08□□□□□ -1.44
SQSTM1-208ENST00000485412 C1orf64Q8NEQ6 169 aa6.08□□□□□ -1.44
SQSTM1-208ENST00000485412 H3BPC8 53 aa6.06□□□□□ -1.44
SQSTM1-208ENST00000485412 MP68P56378 58 aa6.05□□□□□ -1.44
SQSTM1-208ENST00000485412 KRTAP3-3Q9BYR6 98 aa6.05□□□□□ -1.44
SQSTM1-208ENST00000485412 TRAV22A0A0B4J277 110 aa6.03□□□□□ -1.44
SQSTM1-208ENST00000485412 SPRR2EP22531 72 aa6.03□□□□□ -1.44
SQSTM1-208ENST00000485412 SPRR2BP35325 72 aa6.03□□□□□ -1.44
SQSTM1-208ENST00000485412 SPRR2AP35326 72 aa6.03□□□□□ -1.44
SQSTM1-208ENST00000485412 H0Y9P7 68 aa6.02□□□□□ -1.45
SQSTM1-208ENST00000485412 SPRR2FQ96RM1 72 aa6.01□□□□□ -1.45
SQSTM1-208ENST00000485412 SMIM26A0A096LP01 95 aa5.99□□□□□ -1.45
SQSTM1-208ENST00000485412 LINC00208Q96KT6 92 aa5.98□□□□□ -1.45
SQSTM1-208ENST00000485412 LOC101927531A0A1B0GV80 90 aa5.95□□□□□ -1.46
SQSTM1-208ENST00000485412 KRTAP2-2Q9BYT5 123 aa5.95□□□□□ -1.46
SQSTM1-208ENST00000485412 KRTAP2-1Q9BYU5 128 aa5.95□□□□□ -1.46
SQSTM1-208ENST00000485412 CYP4F30PQ9H0H9 118 aa5.93□□□□□ -1.46
SQSTM1-208ENST00000485412 CRIPTQ9P021 101 aa5.91□□□□□ -1.46
SQSTM1-208ENST00000485412 SPANXA2-OT1Q8N9U9 137 aa5.88□□□□□ -1.47
SQSTM1-208ENST00000485412 KRTAP8-1Q8IUC2 63 aa5.86□□□□□ -1.47
SQSTM1-208ENST00000485412 LCE1AQ5T7P2 110 aa5.85□□□□□ -1.47
SQSTM1-208ENST00000485412 MT1XP80297 61 aa5.84□□□□□ -1.47
SQSTM1-208ENST00000485412 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
SQSTM1-208ENST00000485412 SPRR2DP22532 72 aa5.83□□□□□ -1.48
SQSTM1-208ENST00000485412 Q1T7F1 81 aa5.8□□□□□ -1.48
SQSTM1-208ENST00000485412 H0YAA0 97 aa5.76□□□□□ -1.49
SQSTM1-208ENST00000485412 ADM2Q7Z4H4 148 aa5.76□□□□□ -1.49
SQSTM1-208ENST00000485412 COA5Q86WW8 74 aa5.74□□□□□ -1.49
SQSTM1-208ENST00000485412 A8MUN3 132 aa5.73□□□□□ -1.49
SQSTM1-208ENST00000485412 PRO0628Q9UI54 55 aa5.73□□□□□ -1.49
SQSTM1-208ENST00000485412 PLAC4Q8WY50 150 aa5.72□□□□□ -1.49
SQSTM1-208ENST00000485412 DMAC1Q96GE9 116 aa5.72□□□□□ -1.49
SQSTM1-208ENST00000485412 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.5
SQSTM1-208ENST00000485412 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.5
SQSTM1-208ENST00000485412 ACYP2P14621 99 aa5.7□□□□□ -1.5
SQSTM1-208ENST00000485412 KRTAP12-2P59991 146 aa5.7□□□□□ -1.5
SQSTM1-208ENST00000485412 LCE3BQ5TA77 95 aa5.7□□□□□ -1.5
SQSTM1-208ENST00000485412 V9GYY9 64 aa5.7□□□□□ -1.5
SQSTM1-208ENST00000485412 PSPHP1O15172 72 aa5.68□□□□□ -1.5
SQSTM1-208ENST00000485412 BRK1Q8WUW1 75 aa5.68□□□□□ -1.5
SQSTM1-208ENST00000485412 GPR98Q8WXG9 6306 aa5.66□□□□□ -1.5
SQSTM1-208ENST00000485412 P0C880 135 aa5.64□□□□□ -1.51
SQSTM1-208ENST00000485412 PRR15LQ9BU68 103 aa5.62□□□□□ -1.51
SQSTM1-208ENST00000485412 LINC01558Q9Y6Z2 57 aa5.6□□□□□ -1.51
SQSTM1-208ENST00000485412 KRTAP10-7P60409 375 aaPredicted RBP5.59□□□□□ -1.51
SQSTM1-208ENST00000485412 R4GN34 69 aa5.58□□□□□ -1.52
SQSTM1-208ENST00000485412 CHKB-CPT1BH3BT56 60 aa5.56□□□□□ -1.52
SQSTM1-208ENST00000485412 M0QZ58 72 aa5.56□□□□□ -1.52
SQSTM1-208ENST00000485412 KRTAP3-2Q9BYR7 98 aa5.54□□□□□ -1.52
SQSTM1-208ENST00000485412 A8MU10 97 aa5.53□□□□□ -1.52
SQSTM1-208ENST00000485412 LINC01554Q52M75 96 aa5.52□□□□□ -1.53
SQSTM1-208ENST00000485412 KRTAP10-12P60413 245 aa5.51□□□□□ -1.53
SQSTM1-208ENST00000485412 SPTSSBQ8NFR3 76 aa5.5□□□□□ -1.53
SQSTM1-208ENST00000485412 A6NED7 52 aa5.48□□□□□ -1.53
SQSTM1-208ENST00000485412 CDC42SE1Q9NRR8 79 aa5.45□□□□□ -1.54
SQSTM1-208ENST00000485412 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
SQSTM1-208ENST00000485412 KRTAP4-9Q9BYQ8 210 aa5.4□□□□□ -1.54
SQSTM1-208ENST00000485412 A0A1B0GU69 56 aa5.36□□□□□ -1.55
SQSTM1-208ENST00000485412 PMAIP1Q13794 54 aa5.36□□□□□ -1.55
SQSTM1-208ENST00000485412 SEC61GP60059 68 aa5.33□□□□□ -1.56
SQSTM1-208ENST00000485412 SPATA8Q6RVD6 105 aa5.31□□□□□ -1.56
SQSTM1-208ENST00000485412 KTN1-AS1Q86SY8 53 aa5.27□□□□□ -1.57
SQSTM1-208ENST00000485412 UQCR11O14957 56 aa5.25□□□□□ -1.57
SQSTM1-208ENST00000485412 MIR22HGQ0VDD5 57 aa5.25□□□□□ -1.57
SQSTM1-208ENST00000485412 LCE5AQ5TCM9 118 aa5.24□□□□□ -1.57
SQSTM1-208ENST00000485412 KRTAP19-7Q3SYF9 63 aa5.23□□□□□ -1.57
SQSTM1-208ENST00000485412 LCE1DQ5T752 114 aa5.22□□□□□ -1.57
SQSTM1-208ENST00000485412 A0A1B0GU33 70 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms