RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 Q6ZQT0 140 aa8.93□□□□□ -0.98
PNKP-230ENST00000638016 SMIM6P0DI80 62 aa8.92□□□□□ -0.98
PNKP-230ENST00000638016 C8orf87E5RJ46 101 aa8.91□□□□□ -0.98
PNKP-230ENST00000638016 KRTAP9-8Q9BYQ0 159 aa8.89□□□□□ -0.99
PNKP-230ENST00000638016 FAM236DA0A1B0GTK5 79 aa8.88□□□□□ -0.99
PNKP-230ENST00000638016 FAM236CP0DP71 79 aa8.88□□□□□ -0.99
PNKP-230ENST00000638016 BATFQ16520 125 aa8.88□□□□□ -0.99
PNKP-230ENST00000638016 MPLKIPQ8TAP9 179 aa8.88□□□□□ -0.99
PNKP-230ENST00000638016 C14orf132Q9NPU4 83 aa8.88□□□□□ -0.99
PNKP-230ENST00000638016 LOC110117498A0A087WWA1 95 aa8.86□□□□□ -0.99
PNKP-230ENST00000638016 J3KT08 172 aa8.86□□□□□ -0.99
PNKP-230ENST00000638016 JMJD7-PLA2G4BH0Y9G9 81 aa8.85□□□□□ -0.99
PNKP-230ENST00000638016 ZCCHC13Q8WW36 166 aaKnown RBP8.83□□□□□ -1
PNKP-230ENST00000638016 IGKV3D-7A0A0C4DH55 119 aa8.82□□□□□ -1
PNKP-230ENST00000638016 C21orf62-AS1Q17RA5 79 aa8.81□□□□□ -1
PNKP-230ENST00000638016 MTURNQ8N3F0 131 aa8.81□□□□□ -1
PNKP-230ENST00000638016 C8orf17Q9NRJ1 99 aa8.81□□□□□ -1
PNKP-230ENST00000638016 RBM12B-AS1Q9P1G2 102 aa8.81□□□□□ -1
PNKP-230ENST00000638016 A8MWP4 228 aa8.8□□□□□ -1
PNKP-230ENST00000638016 TSTD3H0UI37 97 aa8.8□□□□□ -1
PNKP-230ENST00000638016 NDUFB1O75438 58 aa8.79□□□□□ -1
PNKP-230ENST00000638016 Q8N9P0 234 aaPredicted RBP8.79□□□□□ -1
PNKP-230ENST00000638016 MT2AP02795 61 aa8.78□□□□□ -1
PNKP-230ENST00000638016 LYRM7Q5U5X0 104 aa8.78□□□□□ -1
PNKP-230ENST00000638016 LOC105371267A0A1B0GV96 52 aa8.77□□□□□ -1.01
PNKP-230ENST00000638016 SPINK7P58062 85 aa8.77□□□□□ -1.01
PNKP-230ENST00000638016 USH2AO75445 5202 aa8.76□□□□□ -1.01
PNKP-230ENST00000638016 PDE6GP18545 87 aa8.76□□□□□ -1.01
PNKP-230ENST00000638016 TAX1BP3O14907 124 aa8.75□□□□□ -1.01
PNKP-230ENST00000638016 A0A1B0GW54 56 aa8.74□□□□□ -1.01
PNKP-230ENST00000638016 C9orf118A6NHY6 69 aa8.74□□□□□ -1.01
PNKP-230ENST00000638016 MT1FP04733 61 aa8.73□□□□□ -1.01
PNKP-230ENST00000638016 SSPOA2VEC9 5147 aa8.72□□□□□ -1.01
PNKP-230ENST00000638016 NREPQ16612 68 aa8.72□□□□□ -1.01
PNKP-230ENST00000638016 Q6ZVQ6 151 aa8.72□□□□□ -1.01
PNKP-230ENST00000638016 PRR15Q8IV56 129 aa8.72□□□□□ -1.01
PNKP-230ENST00000638016 A0A1W2PPM0 123 aa8.71□□□□□ -1.02
PNKP-230ENST00000638016 MMP24-AS1A0A0U1RRL7 71 aa8.7□□□□□ -1.02
PNKP-230ENST00000638016 H3BT86 120 aa8.68□□□□□ -1.02
PNKP-230ENST00000638016 K7EQZ3 153 aa8.68□□□□□ -1.02
PNKP-230ENST00000638016 WFDC13Q8IUB5 93 aa8.67□□□□□ -1.02
PNKP-230ENST00000638016 MRPL34Q9BQ48 92 aaKnown RBP8.64□□□□□ -1.03
PNKP-230ENST00000638016 TMEM254Q8TBM7 123 aa8.63□□□□□ -1.03
PNKP-230ENST00000638016 LCE2BO14633 110 aa8.62□□□□□ -1.03
PNKP-230ENST00000638016 KRTAP10-10P60014 251 aa8.62□□□□□ -1.03
PNKP-230ENST00000638016 KRTAP9-3Q9BYQ3 159 aa8.61□□□□□ -1.03
PNKP-230ENST00000638016 hDV103S1A0JD37 113 aa8.6□□□□□ -1.03
PNKP-230ENST00000638016 SMCPP49901 116 aaPredicted RBP8.59□□□□□ -1.03
PNKP-230ENST00000638016 Q8N9L7 120 aa8.59□□□□□ -1.03
PNKP-230ENST00000638016 SPCS1Q9Y6A9 102 aa8.59□□□□□ -1.03
PNKP-230ENST00000638016 NDUFS5O43920 106 aa8.58□□□□□ -1.04
PNKP-230ENST00000638016 BPY2O14599 106 aa8.57□□□□□ -1.04
PNKP-230ENST00000638016 Q5W150 140 aa8.54□□□□□ -1.04
PNKP-230ENST00000638016 IGKV2D-30A0A075B6S6 120 aa8.49□□□□□ -1.05
PNKP-230ENST00000638016 IGKV2-30P06310 120 aa8.49□□□□□ -1.05
PNKP-230ENST00000638016 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
PNKP-230ENST00000638016 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.47□□□□□ -1.05
PNKP-230ENST00000638016 KRTAP19-1Q8IUB9 90 aa8.47□□□□□ -1.05
PNKP-230ENST00000638016 FCGBPQ9Y6R7 5405 aaPredicted RBP8.47□□□□□ -1.05
PNKP-230ENST00000638016 HCG22E2RYF7 251 aa8.46□□□□□ -1.06
PNKP-230ENST00000638016 CASC2Q6XLA1 102 aa8.46□□□□□ -1.06
PNKP-230ENST00000638016 LINC00846Q9NV44 126 aa8.46□□□□□ -1.06
PNKP-230ENST00000638016 COL5A1-AS1Q5SY13 56 aa8.45□□□□□ -1.06
PNKP-230ENST00000638016 K7EP34 96 aa8.43□□□□□ -1.06
PNKP-230ENST00000638016 H1FX-AS1Q4G0G2 97 aa8.43□□□□□ -1.06
PNKP-230ENST00000638016 C7orf65Q6ZTY9 151 aa8.42□□□□□ -1.06
PNKP-230ENST00000638016 UBL5Q9BZL1 73 aa8.37□□□□□ -1.07
PNKP-230ENST00000638016 KRTAP9-7A8MTY7 169 aa8.36□□□□□ -1.07
PNKP-230ENST00000638016 C4orf26Q17RF5 130 aa8.36□□□□□ -1.07
PNKP-230ENST00000638016 MACF1Q9UPN3 7388 aaKnown RBP8.32□□□□□ -1.08
PNKP-230ENST00000638016 CXCL6P80162 114 aa8.32□□□□□ -1.08
PNKP-230ENST00000638016 PCP4L1A6NKN8 68 aa8.3□□□□□ -1.08
PNKP-230ENST00000638016 ETDBQ3ZM63 59 aa8.26□□□□□ -1.09
PNKP-230ENST00000638016 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
PNKP-230ENST00000638016 SYNE2Q8WXH0 6885 aaKnown RBP8.25□□□□□ -1.09
PNKP-230ENST00000638016 KRTAP19-6Q3LI70 58 aa8.25□□□□□ -1.09
PNKP-230ENST00000638016 GTF2H5Q6ZYL4 71 aa8.25□□□□□ -1.09
PNKP-230ENST00000638016 C5orf47Q569G3 176 aa8.22□□□□□ -1.09
PNKP-230ENST00000638016 F8W1H4 67 aa8.21□□□□□ -1.1
PNKP-230ENST00000638016 C1orf64Q8NEQ6 169 aa8.16□□□□□ -1.1
PNKP-230ENST00000638016 S4R3F8 94 aa8.14□□□□□ -1.11
PNKP-230ENST00000638016 TP53AIP1Q9HCN2 124 aa8.13□□□□□ -1.11
PNKP-230ENST00000638016 LCA10Q71F78 164 aa8.12□□□□□ -1.11
PNKP-230ENST00000638016 FAM236AA0A1B0GUQ0 79 aa8.08□□□□□ -1.12
PNKP-230ENST00000638016 FAM236BA0A1B0GV22 79 aa8.08□□□□□ -1.12
PNKP-230ENST00000638016 CYP4F30PQ9H0H9 118 aa8.05□□□□□ -1.12
PNKP-230ENST00000638016 A0A087WVE0 104 aa8.04□□□□□ -1.12
PNKP-230ENST00000638016 CSAG1Q6PB30 78 aa8.04□□□□□ -1.12
PNKP-230ENST00000638016 KRTAP3-3Q9BYR6 98 aa8.03□□□□□ -1.12
PNKP-230ENST00000638016 TRAV22A0A0B4J277 110 aa8.01□□□□□ -1.13
PNKP-230ENST00000638016 MT1BP07438 61 aa8□□□□□ -1.13
PNKP-230ENST00000638016 HIST1H4AP62805 103 aaKnown RBP7.98□□□□□ -1.13
PNKP-230ENST00000638016 ACYP1P07311 99 aa7.97□□□□□ -1.13
PNKP-230ENST00000638016 FAM240AA0A1B0GVK7 77 aa7.96□□□□□ -1.14
PNKP-230ENST00000638016 SPRR2GQ9BYE4 73 aa7.95□□□□□ -1.14
PNKP-230ENST00000638016 LOC101927531A0A1B0GV80 90 aa7.94□□□□□ -1.14
PNKP-230ENST00000638016 ATP5EP2Q5VTU8 51 aa7.94□□□□□ -1.14
PNKP-230ENST00000638016 KRTAP19-8Q3LI54 63 aa7.92□□□□□ -1.14
PNKP-230ENST00000638016 KLKP1Q107X0 134 aa7.91□□□□□ -1.14
PNKP-230ENST00000638016 H0Y9P7 68 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms