RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 ERC2-IT1O76042 136 aa7.18□□□□□ -1.26
LINC00538-201ENST00000626109 C9orf163Q8N9P6 203 aa7.18□□□□□ -1.26
LINC00538-201ENST00000626109 Q9BRP9 147 aa7.16□□□□□ -1.26
LINC00538-201ENST00000626109 RYR3Q15413 4870 aa7.16□□□□□ -1.26
LINC00538-201ENST00000626109 FRAS1Q86XX4 4008 aa7.15□□□□□ -1.26
LINC00538-201ENST00000626109 IGKV4-1P06312 121 aa7.15□□□□□ -1.26
LINC00538-201ENST00000626109 C1orf137Q5JT78 98 aa7.15□□□□□ -1.26
LINC00538-201ENST00000626109 Q8N1X5 172 aa7.15□□□□□ -1.26
LINC00538-201ENST00000626109 FAM168BA1KXE4 195 aa7.15□□□□□ -1.27
LINC00538-201ENST00000626109 MIR22HGQ0VDD5 57 aa7.13□□□□□ -1.27
LINC00538-201ENST00000626109 FAT2Q9NYQ8 4349 aa7.13□□□□□ -1.27
LINC00538-201ENST00000626109 SNURFQ9Y675 71 aa7.13□□□□□ -1.27
LINC00538-201ENST00000626109 SMIM29Q86T20 159 aa7.12□□□□□ -1.27
LINC00538-201ENST00000626109 TMEM254Q8TBM7 123 aa7.11□□□□□ -1.27
LINC00538-201ENST00000626109 SPRR4Q96PI1 79 aa7.11□□□□□ -1.27
LINC00538-201ENST00000626109 A0A1W2PNM2 257 aa7.11□□□□□ -1.27
LINC00538-201ENST00000626109 IGLV7-46A0A075B6I9 117 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 A0A096LNI7 61 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 IGKV2-24A0A0C4DH68 120 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 KRTAP10-1P60331 282 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 KRTAP7-1Q8IUC3 87 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 Q8N9L7 120 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 ST20-AS1Q8NBB2 130 aa7.1□□□□□ -1.27
LINC00538-201ENST00000626109 C20orf166-AS1Q96NR2 134 aa7.09□□□□□ -1.27
LINC00538-201ENST00000626109 P0C880 135 aa7.08□□□□□ -1.28
LINC00538-201ENST00000626109 LIMD2Q9BT23 127 aa7.08□□□□□ -1.28
LINC00538-201ENST00000626109 DNAH11Q96DT5 4516 aa7.07□□□□□ -1.28
LINC00538-201ENST00000626109 PKD1P98161 4303 aa7.07□□□□□ -1.28
LINC00538-201ENST00000626109 SPACA4Q8TDM5 124 aa7.06□□□□□ -1.28
LINC00538-201ENST00000626109 H3BPC8 53 aa7.05□□□□□ -1.28
LINC00538-201ENST00000626109 Q6ZSA8 131 aa7.05□□□□□ -1.28
LINC00538-201ENST00000626109 PANO1I0J062 215 aa7.05□□□□□ -1.28
LINC00538-201ENST00000626109 HECTD4Q9Y4D8 3996 aa7.02□□□□□ -1.29
LINC00538-201ENST00000626109 A0A1W2PNN7 141 aa7.01□□□□□ -1.29
LINC00538-201ENST00000626109 LCE2BO14633 110 aa7.01□□□□□ -1.29
LINC00538-201ENST00000626109 DSCR10P59022 87 aa7.01□□□□□ -1.29
LINC00538-201ENST00000626109 PLAC8Q9NZF1 115 aa7.01□□□□□ -1.29
LINC00538-201ENST00000626109 IGFL1Q6UW32 110 aa7□□□□□ -1.29
LINC00538-201ENST00000626109 HIGD2AQ9BW72 106 aa7□□□□□ -1.29
LINC00538-201ENST00000626109 DNAH5Q8TE73 4624 aa7□□□□□ -1.29
LINC00538-201ENST00000626109 PRLHP81277 87 aa6.99□□□□□ -1.29
LINC00538-201ENST00000626109 K7EQZ3 153 aa6.98□□□□□ -1.29
LINC00538-201ENST00000626109 CSAG1Q6PB30 78 aa6.97□□□□□ -1.29
LINC00538-201ENST00000626109 SPRR1BP22528 89 aa6.96□□□□□ -1.3
LINC00538-201ENST00000626109 PKHD1P08F94 4074 aa6.95□□□□□ -1.3
LINC00538-201ENST00000626109 DYNC1H1Q14204 4646 aaKnown RBP6.95□□□□□ -1.3
LINC00538-201ENST00000626109 A0A087WSZ3 146 aa6.95□□□□□ -1.3
LINC00538-201ENST00000626109 NDUFAF8A1L188 74 aa6.95□□□□□ -1.3
LINC00538-201ENST00000626109 LRP1BQ9NZR2 4599 aa6.94□□□□□ -1.3
LINC00538-201ENST00000626109 NDUFB1O75438 58 aa6.92□□□□□ -1.3
LINC00538-201ENST00000626109 LINC00483Q53H64 154 aa6.91□□□□□ -1.3
LINC00538-201ENST00000626109 DNAH8Q96JB1 4490 aa6.91□□□□□ -1.3
LINC00538-201ENST00000626109 EPPK1P58107 5090 aaKnown RBP6.91□□□□□ -1.3
LINC00538-201ENST00000626109 SMR3BP02814 79 aaPredicted RBP6.91□□□□□ -1.3
LINC00538-201ENST00000626109 Q8N9P0 234 aaPredicted RBP6.91□□□□□ -1.3
LINC00538-201ENST00000626109 A0A0G2JQZ4 141 aa6.89□□□□□ -1.31
LINC00538-201ENST00000626109 LOC101927531A0A1B0GV80 90 aa6.89□□□□□ -1.31
LINC00538-201ENST00000626109 ZCCHC13Q8WW36 166 aaKnown RBP6.89□□□□□ -1.31
LINC00538-201ENST00000626109 PRR15LQ9BU68 103 aa6.89□□□□□ -1.31
LINC00538-201ENST00000626109 DEFB116Q30KQ4 102 aa6.89□□□□□ -1.31
LINC00538-201ENST00000626109 WFDC13Q8IUB5 93 aa6.88□□□□□ -1.31
LINC00538-201ENST00000626109 KRTAP11-1Q8IUC1 163 aa6.88□□□□□ -1.31
LINC00538-201ENST00000626109 RPL37AP61513 92 aaKnown RBP6.87□□□□□ -1.31
LINC00538-201ENST00000626109 PSORS1C2Q9UIG4 136 aa6.87□□□□□ -1.31
LINC00538-201ENST00000626109 APOBP04114 4563 aaKnown RBP6.86□□□□□ -1.31
LINC00538-201ENST00000626109 LINC00472Q9H8W2 130 aa6.86□□□□□ -1.31
LINC00538-201ENST00000626109 KRTAP29-1A8MX34 341 aaPredicted RBP6.85□□□□□ -1.31
LINC00538-201ENST00000626109 Q5VSD8 79 aa6.84□□□□□ -1.32
LINC00538-201ENST00000626109 KRTAP13-1Q8IUC0 172 aa6.83□□□□□ -1.32
LINC00538-201ENST00000626109 SPANXA2-OT1Q8N9U9 137 aa6.83□□□□□ -1.32
LINC00538-201ENST00000626109 IGLV7-43P04211 117 aa6.81□□□□□ -1.32
LINC00538-201ENST00000626109 LINC00208Q96KT6 92 aa6.81□□□□□ -1.32
LINC00538-201ENST00000626109 H0Y9P7 68 aa6.8□□□□□ -1.32
LINC00538-201ENST00000626109 KRTAP3-1Q9BYR8 98 aa6.8□□□□□ -1.32
LINC00538-201ENST00000626109 BIRC6Q9NR09 4857 aa6.8□□□□□ -1.32
LINC00538-201ENST00000626109 KIAA1109Q2LD37 5005 aa6.78□□□□□ -1.32
LINC00538-201ENST00000626109 ZNF861PO60384 105 aa6.78□□□□□ -1.32
LINC00538-201ENST00000626109 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
LINC00538-201ENST00000626109 KRTAP10-4P60372 401 aaPredicted RBP6.78□□□□□ -1.32
LINC00538-201ENST00000626109 RYR1P21817 5038 aa6.77□□□□□ -1.33
LINC00538-201ENST00000626109 HSPG2P98160 4391 aa6.77□□□□□ -1.33
LINC00538-201ENST00000626109 SPAG11AQ6PDA7 123 aa6.76□□□□□ -1.33
LINC00538-201ENST00000626109 TYMSOSQ8TAI1 123 aa6.76□□□□□ -1.33
LINC00538-201ENST00000626109 KRTAP17-1Q9BYP8 105 aa6.76□□□□□ -1.33
LINC00538-201ENST00000626109 TP53AIP1Q9HCN2 124 aa6.76□□□□□ -1.33
LINC00538-201ENST00000626109 SPINK6Q6UWN8 80 aa6.75□□□□□ -1.33
LINC00538-201ENST00000626109 MMP24-AS1A0A0U1RRL7 71 aa6.74□□□□□ -1.33
LINC00538-201ENST00000626109 KRTAP25-1Q3LHN0 102 aa6.72□□□□□ -1.33
LINC00538-201ENST00000626109 FAT1Q14517 4588 aa6.72□□□□□ -1.33
LINC00538-201ENST00000626109 A0A1B0GU33 70 aa6.71□□□□□ -1.34
LINC00538-201ENST00000626109 Q96NJ1 140 aa6.71□□□□□ -1.34
LINC00538-201ENST00000626109 KRTAP4-5Q9BYR2 181 aa6.69□□□□□ -1.34
LINC00538-201ENST00000626109 Q5W150 140 aa6.68□□□□□ -1.34
LINC00538-201ENST00000626109 VPS13BQ7Z7G8 4022 aa6.66□□□□□ -1.34
LINC00538-201ENST00000626109 DMAC1Q96GE9 116 aa6.66□□□□□ -1.34
LINC00538-201ENST00000626109 HERC2O95714 4834 aa6.65□□□□□ -1.34
LINC00538-201ENST00000626109 MRPL34Q9BQ48 92 aaKnown RBP6.64□□□□□ -1.35
LINC00538-201ENST00000626109 SRRM2Q9UQ35 2752 aaKnown RBP6.63□□□□□ -1.35
LINC00538-201ENST00000626109 KRTAP1-4P0C5Y4 121 aa6.62□□□□□ -1.35
LINC00538-201ENST00000626109 ANAPC11Q9NYG5 84 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms