RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 A0A1B0GVX0 72 aa12.14□□□□□ -0.47
PTPRF-216ENST00000617451 S100A1P23297 94 aa12.14□□□□□ -0.47
PTPRF-216ENST00000617451 ZCCHC13Q8WW36 166 aaKnown RBP12.11□□□□□ -0.47
PTPRF-216ENST00000617451 PSMB2P49721 201 aa12.1□□□□□ -0.47
PTPRF-216ENST00000617451 SPINK7P58062 85 aa12.09□□□□□ -0.47
PTPRF-216ENST00000617451 UBE2V1Q13404 147 aa12.09□□□□□ -0.47
PTPRF-216ENST00000617451 COX6CP09669 75 aa12.06□□□□□ -0.48
PTPRF-216ENST00000617451 KRTAP19-6Q3LI70 58 aa12.06□□□□□ -0.48
PTPRF-216ENST00000617451 LINC00846Q9NV44 126 aa12.06□□□□□ -0.48
PTPRF-216ENST00000617451 K7ERJ3 54 aa12.05□□□□□ -0.48
PTPRF-216ENST00000617451 VPS25Q9BRG1 176 aa12.04□□□□□ -0.48
PTPRF-216ENST00000617451 RBM3P98179 157 aaKnown RBP12□□□□□ -0.49
PTPRF-216ENST00000617451 HSD52Q0P140 79 aa12□□□□□ -0.49
PTPRF-216ENST00000617451 J3KT08 172 aa11.99□□□□□ -0.49
PTPRF-216ENST00000617451 Q8N9P0 234 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-216ENST00000617451 DSCR8Q96T75 97 aa11.98□□□□□ -0.49
PTPRF-216ENST00000617451 A8MWP4 228 aa11.97□□□□□ -0.49
PTPRF-216ENST00000617451 WFDC13Q8IUB5 93 aa11.93□□□□□ -0.5
PTPRF-216ENST00000617451 C21orf62-AS1Q17RA5 79 aa11.92□□□□□ -0.5
PTPRF-216ENST00000617451 Q6ZQT0 140 aa11.91□□□□□ -0.5
PTPRF-216ENST00000617451 NDUFB1O75438 58 aa11.89□□□□□ -0.51
PTPRF-216ENST00000617451 C9JAW5 83 aa11.88□□□□□ -0.51
PTPRF-216ENST00000617451 SCGB1C2P0DMR2 95 aa11.86□□□□□ -0.51
PTPRF-216ENST00000617451 LYRM7Q5U5X0 104 aa11.85□□□□□ -0.51
PTPRF-216ENST00000617451 C8orf17Q9NRJ1 99 aa11.85□□□□□ -0.51
PTPRF-216ENST00000617451 BAALC-AS2P0C853 105 aa11.83□□□□□ -0.52
PTPRF-216ENST00000617451 PYY3Q5JQD4 70 aa11.81□□□□□ -0.52
PTPRF-216ENST00000617451 IGKV3D-7A0A0C4DH55 119 aa11.78□□□□□ -0.52
PTPRF-216ENST00000617451 Q6ZVQ6 151 aa11.76□□□□□ -0.53
PTPRF-216ENST00000617451 KRTAP6-3Q3LI67 103 aa11.75□□□□□ -0.53
PTPRF-216ENST00000617451 UQCR10Q9UDW1 63 aa11.74□□□□□ -0.53
PTPRF-216ENST00000617451 A0A1B0GW54 56 aa11.73□□□□□ -0.53
PTPRF-216ENST00000617451 H1FX-AS1Q4G0G2 97 aa11.7□□□□□ -0.54
PTPRF-216ENST00000617451 LOC110117498A0A087WWA1 95 aa11.69□□□□□ -0.54
PTPRF-216ENST00000617451 JMJD7-PLA2G4BH0Y9G9 81 aa11.68□□□□□ -0.54
PTPRF-216ENST00000617451 PRR15Q8IV56 129 aa11.68□□□□□ -0.54
PTPRF-216ENST00000617451 PDE6GP18545 87 aa11.63□□□□□ -0.55
PTPRF-216ENST00000617451 MRPL34Q9BQ48 92 aaKnown RBP11.63□□□□□ -0.55
PTPRF-216ENST00000617451 TMEM254Q8TBM7 123 aa11.62□□□□□ -0.55
PTPRF-216ENST00000617451 MMP24-AS1A0A0U1RRL7 71 aa11.61□□□□□ -0.55
PTPRF-216ENST00000617451 ATXN8Q156A1 80 aa11.6□□□□□ -0.55
PTPRF-216ENST00000617451 NREPQ16612 68 aa11.57□□□□□ -0.56
PTPRF-216ENST00000617451 C14orf132Q9NPU4 83 aa11.57□□□□□ -0.56
PTPRF-216ENST00000617451 hDV103S1A0JD37 113 aa11.53□□□□□ -0.56
PTPRF-216ENST00000617451 NAA38Q9BRA0 125 aaKnown RBP11.52□□□□□ -0.57
PTPRF-216ENST00000617451 NDUFS5O43920 106 aa11.51□□□□□ -0.57
PTPRF-216ENST00000617451 IGKV2D-30A0A075B6S6 120 aa11.49□□□□□ -0.57
PTPRF-216ENST00000617451 IGKV2-30P06310 120 aa11.49□□□□□ -0.57
PTPRF-216ENST00000617451 K7EQZ3 153 aa11.48□□□□□ -0.57
PTPRF-216ENST00000617451 NEBP20929 6669 aa11.48□□□□□ -0.57
PTPRF-216ENST00000617451 Q5W150 140 aa11.45□□□□□ -0.58
PTPRF-216ENST00000617451 C7orf65Q6ZTY9 151 aa11.45□□□□□ -0.58
PTPRF-216ENST00000617451 M0R143 59 aa11.4□□□□□ -0.58
PTPRF-216ENST00000617451 MUC12Q9UKN1 5478 aa11.4□□□□□ -0.58
PTPRF-216ENST00000617451 C4orf26Q17RF5 130 aa11.35□□□□□ -0.59
PTPRF-216ENST00000617451 A6NN06 94 aa11.33□□□□□ -0.6
PTPRF-216ENST00000617451 BPY2O14599 106 aa11.32□□□□□ -0.6
PTPRF-216ENST00000617451 TMA7Q9Y2S6 64 aaKnown RBP11.32□□□□□ -0.6
PTPRF-216ENST00000617451 MT1BP07438 61 aa11.3□□□□□ -0.6
PTPRF-216ENST00000617451 C5orf47Q569G3 176 aa11.29□□□□□ -0.6
PTPRF-216ENST00000617451 FAM236AA0A1B0GUQ0 79 aa11.27□□□□□ -0.61
PTPRF-216ENST00000617451 FAM236BA0A1B0GV22 79 aa11.27□□□□□ -0.61
PTPRF-216ENST00000617451 CASC2Q6XLA1 102 aa11.26□□□□□ -0.61
PTPRF-216ENST00000617451 HCG22E2RYF7 251 aa11.25□□□□□ -0.61
PTPRF-216ENST00000617451 Q5VV11 94 aa11.24□□□□□ -0.61
PTPRF-216ENST00000617451 Q8N9L7 120 aa11.23□□□□□ -0.61
PTPRF-216ENST00000617451 KRTAP19-8Q3LI54 63 aa11.22□□□□□ -0.61
PTPRF-216ENST00000617451 SPRR2GQ9BYE4 73 aa11.21□□□□□ -0.61
PTPRF-216ENST00000617451 H3BT86 120 aa11.2□□□□□ -0.62
PTPRF-216ENST00000617451 CXCL6P80162 114 aa11.2□□□□□ -0.62
PTPRF-216ENST00000617451 KRTAP3-1Q9BYR8 98 aa11.2□□□□□ -0.62
PTPRF-216ENST00000617451 S4R3F8 94 aa11.16□□□□□ -0.62
PTPRF-216ENST00000617451 CSAG1Q6PB30 78 aa11.15□□□□□ -0.62
PTPRF-216ENST00000617451 KRTAP10-5P60370 271 aa11.13□□□□□ -0.63
PTPRF-216ENST00000617451 LCA10Q71F78 164 aa11.1□□□□□ -0.63
PTPRF-216ENST00000617451 TSTD3H0UI37 97 aa11.08□□□□□ -0.64
PTPRF-216ENST00000617451 BATFQ16520 125 aa11.08□□□□□ -0.64
PTPRF-216ENST00000617451 C1orf64Q8NEQ6 169 aa11.08□□□□□ -0.64
PTPRF-216ENST00000617451 KRTAP20-1Q3LI63 56 aa11.07□□□□□ -0.64
PTPRF-216ENST00000617451 C9orf118A6NHY6 69 aa11.05□□□□□ -0.64
PTPRF-216ENST00000617451 MDN1Q9NU22 5596 aa11.05□□□□□ -0.64
PTPRF-216ENST00000617451 KMT2DO14686 5537 aa11.04□□□□□ -0.64
PTPRF-216ENST00000617451 KRTAP5-9P26371 169 aa11.04□□□□□ -0.64
PTPRF-216ENST00000617451 A0A1W2PPM0 123 aa11.02□□□□□ -0.65
PTPRF-216ENST00000617451 KLKP1Q107X0 134 aa11.02□□□□□ -0.65
PTPRF-216ENST00000617451 SMIM6P0DI80 62 aa10.98□□□□□ -0.65
PTPRF-216ENST00000617451 TAX1BP3O14907 124 aa10.97□□□□□ -0.65
PTPRF-216ENST00000617451 KRTAP3-3Q9BYR6 98 aa10.92□□□□□ -0.66
PTPRF-216ENST00000617451 UBL5Q9BZL1 73 aa10.91□□□□□ -0.66
PTPRF-216ENST00000617451 SMCPP49901 116 aaPredicted RBP10.88□□□□□ -0.67
PTPRF-216ENST00000617451 TP53AIP1Q9HCN2 124 aa10.86□□□□□ -0.67
PTPRF-216ENST00000617451 CRIPTQ9P021 101 aa10.84□□□□□ -0.67
PTPRF-216ENST00000617451 IMUPQ9GZP8 106 aa10.83□□□□□ -0.68
PTPRF-216ENST00000617451 SPCS1Q9Y6A9 102 aa10.82□□□□□ -0.68
PTPRF-216ENST00000617451 A0A087WVE0 104 aa10.74□□□□□ -0.69
PTPRF-216ENST00000617451 CYP4F30PQ9H0H9 118 aa10.74□□□□□ -0.69
PTPRF-216ENST00000617451 PRO0461Q9UI25 63 aa10.71□□□□□ -0.69
PTPRF-216ENST00000617451 KRTAP2-3P0C7H8 128 aa10.68□□□□□ -0.7
PTPRF-216ENST00000617451 KRTAP2-4Q9BYR9 128 aa10.68□□□□□ -0.7
PTPRF-216ENST00000617451 H0YAA0 97 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms