RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 FAM236DA0A1B0GTK5 79 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 TRACP01848 142 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 FAM236CP0DP71 79 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 HSD52Q0P140 79 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 UBE2V1Q13404 147 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 RBM12B-AS1Q9P1G2 102 aa3.8□□□□□ -1.8
CUX1-219ENST00000606749 MT2AP02795 61 aa3.79□□□□□ -1.8
CUX1-219ENST00000606749 PYY3Q5JQD4 70 aa3.79□□□□□ -1.8
CUX1-219ENST00000606749 A0A1B0GVX0 72 aa3.77□□□□□ -1.81
CUX1-219ENST00000606749 C8orf87E5RJ46 101 aa3.77□□□□□ -1.81
CUX1-219ENST00000606749 MT1FP04733 61 aa3.77□□□□□ -1.81
CUX1-219ENST00000606749 RBM3P98179 157 aaKnown RBP3.77□□□□□ -1.81
CUX1-219ENST00000606749 SCGB1C2P0DMR2 95 aa3.76□□□□□ -1.81
CUX1-219ENST00000606749 KRTAP10-10P60014 251 aa3.76□□□□□ -1.81
CUX1-219ENST00000606749 DSCR8Q96T75 97 aa3.76□□□□□ -1.81
CUX1-219ENST00000606749 VPS25Q9BRG1 176 aa3.76□□□□□ -1.81
CUX1-219ENST00000606749 KRTAP9-3Q9BYQ3 159 aa3.76□□□□□ -1.81
CUX1-219ENST00000606749 KRTAP9-7A8MTY7 169 aa3.75□□□□□ -1.81
CUX1-219ENST00000606749 KRTAP4-7Q9BYR0 210 aa3.75□□□□□ -1.81
CUX1-219ENST00000606749 BAALC-AS2P0C853 105 aa3.74□□□□□ -1.81
CUX1-219ENST00000606749 ZCCHC13Q8WW36 166 aaKnown RBP3.74□□□□□ -1.81
CUX1-219ENST00000606749 UQCR10Q9UDW1 63 aa3.74□□□□□ -1.81
CUX1-219ENST00000606749 C9JAW5 83 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 J3KT08 172 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 SPINK7P58062 85 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 Q6ZQT0 140 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 KRTAP19-1Q8IUB9 90 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 MTURNQ8N3F0 131 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 USH2AO75445 5202 aa3.73□□□□□ -1.81
CUX1-219ENST00000606749 C21orf62-AS1Q17RA5 79 aa3.72□□□□□ -1.81
CUX1-219ENST00000606749 Q8N9P0 234 aaPredicted RBP3.72□□□□□ -1.81
CUX1-219ENST00000606749 NDUFB1O75438 58 aa3.7□□□□□ -1.82
CUX1-219ENST00000606749 SSPOA2VEC9 5147 aa3.69□□□□□ -1.82
CUX1-219ENST00000606749 A8MWP4 228 aa3.69□□□□□ -1.82
CUX1-219ENST00000606749 C8orf17Q9NRJ1 99 aa3.69□□□□□ -1.82
CUX1-219ENST00000606749 A0A1B0GW54 56 aa3.68□□□□□ -1.82
CUX1-219ENST00000606749 JMJD7-PLA2G4BH0Y9G9 81 aa3.68□□□□□ -1.82
CUX1-219ENST00000606749 FCGBPQ9Y6R7 5405 aaPredicted RBP3.68□□□□□ -1.82
CUX1-219ENST00000606749 LOC110117498A0A087WWA1 95 aa3.67□□□□□ -1.82
CUX1-219ENST00000606749 IGKV3D-7A0A0C4DH55 119 aa3.67□□□□□ -1.82
CUX1-219ENST00000606749 ATXN8Q156A1 80 aa3.67□□□□□ -1.82
CUX1-219ENST00000606749 LYRM7Q5U5X0 104 aa3.67□□□□□ -1.82
CUX1-219ENST00000606749 TMA7Q9Y2S6 64 aaKnown RBP3.67□□□□□ -1.82
CUX1-219ENST00000606749 PDE6GP18545 87 aa3.66□□□□□ -1.82
CUX1-219ENST00000606749 Q6ZVQ6 151 aa3.66□□□□□ -1.82
CUX1-219ENST00000606749 WFDC13Q8IUB5 93 aa3.66□□□□□ -1.82
CUX1-219ENST00000606749 NAA38Q9BRA0 125 aaKnown RBP3.66□□□□□ -1.82
CUX1-219ENST00000606749 LCE1DQ5T752 114 aa3.65□□□□□ -1.83
CUX1-219ENST00000606749 PRR15Q8IV56 129 aa3.65□□□□□ -1.83
CUX1-219ENST00000606749 C14orf132Q9NPU4 83 aa3.65□□□□□ -1.83
CUX1-219ENST00000606749 M0R143 59 aa3.64□□□□□ -1.83
CUX1-219ENST00000606749 NREPQ16612 68 aa3.64□□□□□ -1.83
CUX1-219ENST00000606749 KRTAP19-6Q3LI70 58 aa3.63□□□□□ -1.83
CUX1-219ENST00000606749 LINC00846Q9NV44 126 aa3.63□□□□□ -1.83
CUX1-219ENST00000606749 TMEM254Q8TBM7 123 aa3.62□□□□□ -1.83
CUX1-219ENST00000606749 MRPL34Q9BQ48 92 aaKnown RBP3.62□□□□□ -1.83
CUX1-219ENST00000606749 MMP24-AS1A0A0U1RRL7 71 aa3.61□□□□□ -1.83
CUX1-219ENST00000606749 H1FX-AS1Q4G0G2 97 aa3.61□□□□□ -1.83
CUX1-219ENST00000606749 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
CUX1-219ENST00000606749 hDV103S1A0JD37 113 aa3.6□□□□□ -1.83
CUX1-219ENST00000606749 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
CUX1-219ENST00000606749 K7EQZ3 153 aa3.59□□□□□ -1.83
CUX1-219ENST00000606749 NDUFS5O43920 106 aa3.58□□□□□ -1.84
CUX1-219ENST00000606749 KRTAP19-4Q3LI73 84 aa3.57□□□□□ -1.84
CUX1-219ENST00000606749 Q5W150 140 aa3.57□□□□□ -1.84
CUX1-219ENST00000606749 MACF1Q9UPN3 7388 aaKnown RBP3.56□□□□□ -1.84
CUX1-219ENST00000606749 IGKV2D-30A0A075B6S6 120 aa3.56□□□□□ -1.84
CUX1-219ENST00000606749 BPY2O14599 106 aa3.56□□□□□ -1.84
CUX1-219ENST00000606749 IGKV2-30P06310 120 aa3.56□□□□□ -1.84
CUX1-219ENST00000606749 H3BT86 120 aa3.55□□□□□ -1.84
CUX1-219ENST00000606749 BATFQ16520 125 aa3.55□□□□□ -1.84
CUX1-219ENST00000606749 SYNE2Q8WXH0 6885 aaKnown RBP3.54□□□□□ -1.84
CUX1-219ENST00000606749 C9orf118A6NHY6 69 aa3.54□□□□□ -1.84
CUX1-219ENST00000606749 SMIM6P0DI80 62 aa3.54□□□□□ -1.84
CUX1-219ENST00000606749 C7orf65Q6ZTY9 151 aa3.54□□□□□ -1.84
CUX1-219ENST00000606749 CASC2Q6XLA1 102 aa3.53□□□□□ -1.84
CUX1-219ENST00000606749 A0A1W2PPM0 123 aa3.52□□□□□ -1.85
CUX1-219ENST00000606749 TSTD3H0UI37 97 aa3.52□□□□□ -1.85
CUX1-219ENST00000606749 TAX1BP3O14907 124 aa3.52□□□□□ -1.85
CUX1-219ENST00000606749 C4orf26Q17RF5 130 aa3.52□□□□□ -1.85
CUX1-219ENST00000606749 Q8N9L7 120 aa3.52□□□□□ -1.85
CUX1-219ENST00000606749 HCG22E2RYF7 251 aa3.51□□□□□ -1.85
CUX1-219ENST00000606749 KRTAP6-3Q3LI67 103 aa3.51□□□□□ -1.85
CUX1-219ENST00000606749 CXCL6P80162 114 aa3.49□□□□□ -1.85
CUX1-219ENST00000606749 C5orf47Q569G3 176 aa3.48□□□□□ -1.85
CUX1-219ENST00000606749 KRTAP3-1Q9BYR8 98 aa3.48□□□□□ -1.85
CUX1-219ENST00000606749 SPCS1Q9Y6A9 102 aa3.46□□□□□ -1.86
CUX1-219ENST00000606749 FAM236AA0A1B0GUQ0 79 aa3.45□□□□□ -1.86
CUX1-219ENST00000606749 FAM236BA0A1B0GV22 79 aa3.45□□□□□ -1.86
CUX1-219ENST00000606749 C1orf64Q8NEQ6 169 aa3.45□□□□□ -1.86
CUX1-219ENST00000606749 UBL5Q9BZL1 73 aa3.45□□□□□ -1.86
CUX1-219ENST00000606749 S4R3F8 94 aa3.45□□□□□ -1.86
CUX1-219ENST00000606749 MT1BP07438 61 aa3.44□□□□□ -1.86
CUX1-219ENST00000606749 KRTAP5-3Q6L8H2 238 aa3.44□□□□□ -1.86
CUX1-219ENST00000606749 CSAG1Q6PB30 78 aa3.44□□□□□ -1.86
CUX1-219ENST00000606749 LOC105371267A0A1B0GV96 52 aa3.43□□□□□ -1.86
CUX1-219ENST00000606749 A6NN06 94 aa3.43□□□□□ -1.86
CUX1-219ENST00000606749 KRTAP19-8Q3LI54 63 aa3.43□□□□□ -1.86
CUX1-219ENST00000606749 LCA10Q71F78 164 aa3.43□□□□□ -1.86
CUX1-219ENST00000606749 SPRR2GQ9BYE4 73 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms