RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 IGHV6-1A0A0B4J1U7 121 aa8.87□□□□□ -0.99
TRIM28-215ENST00000601150 MTURNQ8N3F0 131 aa8.87□□□□□ -0.99
TRIM28-215ENST00000601150 SPCS1Q9Y6A9 102 aa8.87□□□□□ -0.99
TRIM28-215ENST00000601150 A0A1B0GVX0 72 aa8.85□□□□□ -0.99
TRIM28-215ENST00000601150 KRTAP16-1A8MUX0 517 aa8.85□□□□□ -0.99
TRIM28-215ENST00000601150 NOTCH2NLQ7Z3S9 236 aa8.85□□□□□ -0.99
TRIM28-215ENST00000601150 KRTAP19-2Q3LHN2 52 aa8.84□□□□□ -0.99
TRIM28-215ENST00000601150 C8orf87E5RJ46 101 aa8.83□□□□□ -1
TRIM28-215ENST00000601150 LCE2CQ5TA81 110 aa8.83□□□□□ -1
TRIM28-215ENST00000601150 NDUFB1O75438 58 aa8.79□□□□□ -1
TRIM28-215ENST00000601150 PCP4L1A6NKN8 68 aa8.78□□□□□ -1
TRIM28-215ENST00000601150 NREPQ16612 68 aa8.78□□□□□ -1
TRIM28-215ENST00000601150 A8MWP4 228 aa8.76□□□□□ -1.01
TRIM28-215ENST00000601150 SMCPP49901 116 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-215ENST00000601150 K7EP34 96 aa8.75□□□□□ -1.01
TRIM28-215ENST00000601150 COX6B2Q6YFQ2 88 aa8.75□□□□□ -1.01
TRIM28-215ENST00000601150 IGKV3D-7A0A0C4DH55 119 aa8.72□□□□□ -1.01
TRIM28-215ENST00000601150 MT1HP80294 61 aa8.72□□□□□ -1.01
TRIM28-215ENST00000601150 C8orf17Q9NRJ1 99 aa8.71□□□□□ -1.02
TRIM28-215ENST00000601150 PRO0461Q9UI25 63 aa8.71□□□□□ -1.02
TRIM28-215ENST00000601150 GTF2H5Q6ZYL4 71 aa8.69□□□□□ -1.02
TRIM28-215ENST00000601150 PRR15Q8IV56 129 aa8.68□□□□□ -1.02
TRIM28-215ENST00000601150 Q8N9P0 234 aaPredicted RBP8.66□□□□□ -1.02
TRIM28-215ENST00000601150 BPY2O14599 106 aa8.64□□□□□ -1.03
TRIM28-215ENST00000601150 ZCCHC13Q8WW36 166 aaKnown RBP8.64□□□□□ -1.03
TRIM28-215ENST00000601150 Q6ZVQ6 151 aa8.63□□□□□ -1.03
TRIM28-215ENST00000601150 K7EQZ3 153 aa8.62□□□□□ -1.03
TRIM28-215ENST00000601150 MMP24-AS1A0A0U1RRL7 71 aa8.61□□□□□ -1.03
TRIM28-215ENST00000601150 F8W1H4 67 aa8.6□□□□□ -1.03
TRIM28-215ENST00000601150 M0R2T5 61 aa8.6□□□□□ -1.03
TRIM28-215ENST00000601150 TMEM254Q8TBM7 123 aa8.59□□□□□ -1.03
TRIM28-215ENST00000601150 MRPL34Q9BQ48 92 aaKnown RBP8.57□□□□□ -1.04
TRIM28-215ENST00000601150 KRTAP9-2Q9BYQ4 174 aa8.57□□□□□ -1.04
TRIM28-215ENST00000601150 hDV103S1A0JD37 113 aa8.56□□□□□ -1.04
TRIM28-215ENST00000601150 UBL5Q9BZL1 73 aa8.56□□□□□ -1.04
TRIM28-215ENST00000601150 LINC00846Q9NV44 126 aa8.56□□□□□ -1.04
TRIM28-215ENST00000601150 HRES1P13985 223 aa8.55□□□□□ -1.04
TRIM28-215ENST00000601150 KRTAP10-6P60371 365 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-215ENST00000601150 ETDBQ3ZM63 59 aa8.53□□□□□ -1.04
TRIM28-215ENST00000601150 RBM12B-AS1Q9P1G2 102 aa8.53□□□□□ -1.04
TRIM28-215ENST00000601150 FAM236DA0A1B0GTK5 79 aa8.52□□□□□ -1.05
TRIM28-215ENST00000601150 FAM236CP0DP71 79 aa8.52□□□□□ -1.05
TRIM28-215ENST00000601150 SPINK7P58062 85 aa8.52□□□□□ -1.05
TRIM28-215ENST00000601150 Q8N9L7 120 aa8.52□□□□□ -1.05
TRIM28-215ENST00000601150 MPLKIPQ8TAP9 179 aa8.52□□□□□ -1.05
TRIM28-215ENST00000601150 FLGP20930 4061 aaPredicted RBP8.51□□□□□ -1.05
TRIM28-215ENST00000601150 LORP23490 312 aaPredicted RBP8.51□□□□□ -1.05
TRIM28-215ENST00000601150 NDUFS5O43920 106 aa8.5□□□□□ -1.05
TRIM28-215ENST00000601150 CASC2Q6XLA1 102 aa8.47□□□□□ -1.05
TRIM28-215ENST00000601150 WFDC13Q8IUB5 93 aa8.47□□□□□ -1.05
TRIM28-215ENST00000601150 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-215ENST00000601150 HCG22E2RYF7 251 aa8.4□□□□□ -1.06
TRIM28-215ENST00000601150 CXCL6P80162 114 aa8.39□□□□□ -1.07
TRIM28-215ENST00000601150 KRTAP9-6A0A140TA67 174 aa8.37□□□□□ -1.07
TRIM28-215ENST00000601150 Q5W150 140 aa8.37□□□□□ -1.07
TRIM28-215ENST00000601150 ACYP1P07311 99 aa8.36□□□□□ -1.07
TRIM28-215ENST00000601150 IGKV2D-30A0A075B6S6 120 aa8.32□□□□□ -1.08
TRIM28-215ENST00000601150 FAM240AA0A1B0GVK7 77 aa8.32□□□□□ -1.08
TRIM28-215ENST00000601150 IGKV2-30P06310 120 aa8.32□□□□□ -1.08
TRIM28-215ENST00000601150 C7orf65Q6ZTY9 151 aa8.32□□□□□ -1.08
TRIM28-215ENST00000601150 A0A1B0GV90 55 aa8.3□□□□□ -1.08
TRIM28-215ENST00000601150 KRTAP9-8Q9BYQ0 159 aa8.28□□□□□ -1.08
TRIM28-215ENST00000601150 TP53AIP1Q9HCN2 124 aa8.25□□□□□ -1.09
TRIM28-215ENST00000601150 ATP5EP2Q5VTU8 51 aa8.24□□□□□ -1.09
TRIM28-215ENST00000601150 H1FX-AS1Q4G0G2 97 aa8.21□□□□□ -1.1
TRIM28-215ENST00000601150 MT2AP02795 61 aa8.18□□□□□ -1.1
TRIM28-215ENST00000601150 HIST1H4AP62805 103 aaKnown RBP8.17□□□□□ -1.1
TRIM28-215ENST00000601150 C4orf26Q17RF5 130 aa8.16□□□□□ -1.1
TRIM28-215ENST00000601150 LINC00643Q86TS7 51 aa8.16□□□□□ -1.1
TRIM28-215ENST00000601150 CRCT1Q9UGL9 99 aa8.14□□□□□ -1.11
TRIM28-215ENST00000601150 MT1FP04733 61 aa8.12□□□□□ -1.11
TRIM28-215ENST00000601150 FSIP2Q5CZC0 6907 aa8.11□□□□□ -1.11
TRIM28-215ENST00000601150 KRTAP10-10P60014 251 aa8.1□□□□□ -1.11
TRIM28-215ENST00000601150 TRAV22A0A0B4J277 110 aa8.08□□□□□ -1.12
TRIM28-215ENST00000601150 J3QR89 54 aa8.08□□□□□ -1.12
TRIM28-215ENST00000601150 A0A087WVE0 104 aa8.06□□□□□ -1.12
TRIM28-215ENST00000601150 UQCRQO14949 82 aa8.04□□□□□ -1.12
TRIM28-215ENST00000601150 C1orf64Q8NEQ6 169 aa8.04□□□□□ -1.12
TRIM28-215ENST00000601150 CYP4F30PQ9H0H9 118 aa8.04□□□□□ -1.12
TRIM28-215ENST00000601150 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
TRIM28-215ENST00000601150 KRTAP3-1Q9BYR8 98 aa8.02□□□□□ -1.13
TRIM28-215ENST00000601150 KRTAP9-3Q9BYQ3 159 aa8□□□□□ -1.13
TRIM28-215ENST00000601150 H0Y9P7 68 aa7.98□□□□□ -1.13
TRIM28-215ENST00000601150 ATOX1O00244 68 aa7.98□□□□□ -1.13
TRIM28-215ENST00000601150 S4R3F8 94 aa7.96□□□□□ -1.14
TRIM28-215ENST00000601150 LCE2BO14633 110 aa7.93□□□□□ -1.14
TRIM28-215ENST00000601150 C5orf47Q569G3 176 aa7.93□□□□□ -1.14
TRIM28-215ENST00000601150 LCA10Q71F78 164 aa7.9□□□□□ -1.14
TRIM28-215ENST00000601150 OCR1Q9BZK8 76 aa7.9□□□□□ -1.14
TRIM28-215ENST00000601150 USH2AO75445 5202 aa7.89□□□□□ -1.15
TRIM28-215ENST00000601150 CSAG1Q6PB30 78 aa7.88□□□□□ -1.15
TRIM28-215ENST00000601150 LINC00208Q96KT6 92 aa7.87□□□□□ -1.15
TRIM28-215ENST00000601150 MP68P56378 58 aa7.86□□□□□ -1.15
TRIM28-215ENST00000601150 K7ERU9 68 aa7.84□□□□□ -1.15
TRIM28-215ENST00000601150 SCGB1A1P11684 91 aa7.82□□□□□ -1.16
TRIM28-215ENST00000601150 IMUPQ9GZP8 106 aa7.8□□□□□ -1.16
TRIM28-215ENST00000601150 KLKP1Q107X0 134 aa7.79□□□□□ -1.16
TRIM28-215ENST00000601150 KRTAP3-3Q9BYR6 98 aa7.79□□□□□ -1.16
TRIM28-215ENST00000601150 FAM236AA0A1B0GUQ0 79 aa7.78□□□□□ -1.16
TRIM28-215ENST00000601150 FAM236BA0A1B0GV22 79 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms