RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 CEND1Q8N111 149 aa4.69□□□□□ -1.66
LIG1-209ENST00000596104 TMEM256-PLSCR3K7ERE1 68 aa4.68□□□□□ -1.66
LIG1-209ENST00000596104 DNAL4O96015 105 aa4.68□□□□□ -1.66
LIG1-209ENST00000596104 FXYD2P54710 66 aa4.67□□□□□ -1.66
LIG1-209ENST00000596104 NEBP20929 6669 aa4.66□□□□□ -1.66
LIG1-209ENST00000596104 TMEM238LA0A1B0GVL6 79 aa4.66□□□□□ -1.66
LIG1-209ENST00000596104 A6NJY4 79 aa4.66□□□□□ -1.66
LIG1-209ENST00000596104 UBE2V1Q13404 147 aa4.66□□□□□ -1.66
LIG1-209ENST00000596104 J3KT08 172 aa4.65□□□□□ -1.67
LIG1-209ENST00000596104 PAM16Q9Y3D7 125 aa4.65□□□□□ -1.67
LIG1-209ENST00000596104 S100A6P06703 90 aa4.64□□□□□ -1.67
LIG1-209ENST00000596104 SPATA45Q537H7 98 aa4.64□□□□□ -1.67
LIG1-209ENST00000596104 VPS25Q9BRG1 176 aa4.64□□□□□ -1.67
LIG1-209ENST00000596104 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
LIG1-209ENST00000596104 C8orf17Q9NRJ1 99 aa4.62□□□□□ -1.67
LIG1-209ENST00000596104 K7ERJ3 54 aa4.61□□□□□ -1.67
LIG1-209ENST00000596104 PSMB2P49721 201 aa4.61□□□□□ -1.67
LIG1-209ENST00000596104 RBM3P98179 157 aaKnown RBP4.61□□□□□ -1.67
LIG1-209ENST00000596104 Q6ZQT0 140 aa4.61□□□□□ -1.67
LIG1-209ENST00000596104 NDUFB1O75438 58 aa4.6□□□□□ -1.67
LIG1-209ENST00000596104 LYRM7Q5U5X0 104 aa4.6□□□□□ -1.67
LIG1-209ENST00000596104 DSCR8Q96T75 97 aa4.6□□□□□ -1.67
LIG1-209ENST00000596104 VAMP8Q9BV40 100 aa4.6□□□□□ -1.67
LIG1-209ENST00000596104 COX6CP09669 75 aa4.59□□□□□ -1.67
LIG1-209ENST00000596104 C21orf62-AS1Q17RA5 79 aa4.59□□□□□ -1.67
LIG1-209ENST00000596104 IGKV3D-7A0A0C4DH55 119 aa4.58□□□□□ -1.68
LIG1-209ENST00000596104 A6NN06 94 aa4.57□□□□□ -1.68
LIG1-209ENST00000596104 C9JAW5 83 aa4.57□□□□□ -1.68
LIG1-209ENST00000596104 KRTAP20-1Q3LI63 56 aa4.57□□□□□ -1.68
LIG1-209ENST00000596104 Q6ZVQ6 151 aa4.57□□□□□ -1.68
LIG1-209ENST00000596104 MT1BP07438 61 aa4.56□□□□□ -1.68
LIG1-209ENST00000596104 HSD52Q0P140 79 aa4.56□□□□□ -1.68
LIG1-209ENST00000596104 MUC12Q9UKN1 5478 aa4.56□□□□□ -1.68
LIG1-209ENST00000596104 S100A1P23297 94 aa4.55□□□□□ -1.68
LIG1-209ENST00000596104 BAALC-AS2P0C853 105 aa4.53□□□□□ -1.68
LIG1-209ENST00000596104 PRR15Q8IV56 129 aa4.53□□□□□ -1.68
LIG1-209ENST00000596104 MMP24-AS1A0A0U1RRL7 71 aa4.52□□□□□ -1.69
LIG1-209ENST00000596104 KRTAP5-9P26371 169 aa4.52□□□□□ -1.69
LIG1-209ENST00000596104 MRPL34Q9BQ48 92 aaKnown RBP4.52□□□□□ -1.69
LIG1-209ENST00000596104 A0A1B0GW54 56 aa4.51□□□□□ -1.69
LIG1-209ENST00000596104 TMEM254Q8TBM7 123 aa4.51□□□□□ -1.69
LIG1-209ENST00000596104 LOC110117498A0A087WWA1 95 aa4.5□□□□□ -1.69
LIG1-209ENST00000596104 SCGB1C2P0DMR2 95 aa4.5□□□□□ -1.69
LIG1-209ENST00000596104 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
LIG1-209ENST00000596104 KRTAP10-5P60370 271 aa4.49□□□□□ -1.69
LIG1-209ENST00000596104 Q5VV11 94 aa4.49□□□□□ -1.69
LIG1-209ENST00000596104 IGKV2D-30A0A075B6S6 120 aa4.48□□□□□ -1.69
LIG1-209ENST00000596104 IGKV2-30P06310 120 aa4.48□□□□□ -1.69
LIG1-209ENST00000596104 SPRR2GQ9BYE4 73 aa4.48□□□□□ -1.69
LIG1-209ENST00000596104 JMJD7-PLA2G4BH0Y9G9 81 aa4.47□□□□□ -1.69
LIG1-209ENST00000596104 Q5W150 140 aa4.47□□□□□ -1.69
LIG1-209ENST00000596104 C7orf65Q6ZTY9 151 aa4.47□□□□□ -1.69
LIG1-209ENST00000596104 KMT2DO14686 5537 aa4.47□□□□□ -1.69
LIG1-209ENST00000596104 hDV103S1A0JD37 113 aa4.46□□□□□ -1.7
LIG1-209ENST00000596104 NDUFS5O43920 106 aa4.46□□□□□ -1.7
LIG1-209ENST00000596104 PDE6GP18545 87 aa4.46□□□□□ -1.7
LIG1-209ENST00000596104 FAM236AA0A1B0GUQ0 79 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 FAM236BA0A1B0GV22 79 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 NREPQ16612 68 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 C4orf26Q17RF5 130 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 C5orf47Q569G3 176 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 PYY3Q5JQD4 70 aa4.45□□□□□ -1.7
LIG1-209ENST00000596104 K7EQZ3 153 aa4.44□□□□□ -1.7
LIG1-209ENST00000596104 C14orf132Q9NPU4 83 aa4.44□□□□□ -1.7
LIG1-209ENST00000596104 MDN1Q9NU22 5596 aa4.44□□□□□ -1.7
LIG1-209ENST00000596104 ATXN8Q156A1 80 aa4.42□□□□□ -1.7
LIG1-209ENST00000596104 UQCR10Q9UDW1 63 aa4.42□□□□□ -1.7
LIG1-209ENST00000596104 KRTAP3-1Q9BYR8 98 aa4.41□□□□□ -1.7
LIG1-209ENST00000596104 KRTAP2-3P0C7H8 128 aa4.39□□□□□ -1.71
LIG1-209ENST00000596104 KRTAP2-4Q9BYR9 128 aa4.39□□□□□ -1.71
LIG1-209ENST00000596104 CSAG1Q6PB30 78 aa4.38□□□□□ -1.71
LIG1-209ENST00000596104 NAA38Q9BRA0 125 aaKnown RBP4.38□□□□□ -1.71
LIG1-209ENST00000596104 KLKP1Q107X0 134 aa4.37□□□□□ -1.71
LIG1-209ENST00000596104 S4R3F8 94 aa4.37□□□□□ -1.71
LIG1-209ENST00000596104 HCG22E2RYF7 251 aa4.36□□□□□ -1.71
LIG1-209ENST00000596104 LCA10Q71F78 164 aa4.36□□□□□ -1.71
LIG1-209ENST00000596104 BPY2O14599 106 aa4.35□□□□□ -1.71
LIG1-209ENST00000596104 CASC2Q6XLA1 102 aa4.34□□□□□ -1.71
LIG1-209ENST00000596104 SMCPP49901 116 aaPredicted RBP4.33□□□□□ -1.72
LIG1-209ENST00000596104 CXCL6P80162 114 aa4.33□□□□□ -1.72
LIG1-209ENST00000596104 Q8N9L7 120 aa4.33□□□□□ -1.72
LIG1-209ENST00000596104 C1orf64Q8NEQ6 169 aa4.32□□□□□ -1.72
LIG1-209ENST00000596104 KRTAP3-3Q9BYR6 98 aa4.3□□□□□ -1.72
LIG1-209ENST00000596104 IMUPQ9GZP8 106 aa4.3□□□□□ -1.72
LIG1-209ENST00000596104 M0R143 59 aa4.29□□□□□ -1.72
LIG1-209ENST00000596104 SPRR2EP22531 72 aa4.29□□□□□ -1.72
LIG1-209ENST00000596104 SPRR2BP35325 72 aa4.29□□□□□ -1.72
LIG1-209ENST00000596104 SPRR2AP35326 72 aa4.29□□□□□ -1.72
LIG1-209ENST00000596104 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
LIG1-209ENST00000596104 CRIPTQ9P021 101 aa4.27□□□□□ -1.73
LIG1-209ENST00000596104 H3BT86 120 aa4.26□□□□□ -1.73
LIG1-209ENST00000596104 TMA7Q9Y2S6 64 aaKnown RBP4.25□□□□□ -1.73
LIG1-209ENST00000596104 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
LIG1-209ENST00000596104 KRTAP2-1Q9BYU5 128 aa4.24□□□□□ -1.73
LIG1-209ENST00000596104 LCE1AQ5T7P2 110 aa4.23□□□□□ -1.73
LIG1-209ENST00000596104 A0A087WVE0 104 aa4.22□□□□□ -1.73
LIG1-209ENST00000596104 MT1XP80297 61 aa4.2□□□□□ -1.74
LIG1-209ENST00000596104 TSTD3H0UI37 97 aa4.19□□□□□ -1.74
LIG1-209ENST00000596104 KRTAP8-1Q8IUC2 63 aa4.19□□□□□ -1.74
LIG1-209ENST00000596104 TP53AIP1Q9HCN2 124 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms