RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 M0R2T5 61 aa12.34□□□□□ -0.43
SHMT1-206ENST00000579558 Q6ZQT0 140 aa12.34□□□□□ -0.43
SHMT1-206ENST00000579558 A0A1B0GVX0 72 aa12.33□□□□□ -0.44
SHMT1-206ENST00000579558 LOC110117498A0A087WWA1 95 aa12.32□□□□□ -0.44
SHMT1-206ENST00000579558 C8orf87E5RJ46 101 aa12.31□□□□□ -0.44
SHMT1-206ENST00000579558 J3KT08 172 aa12.31□□□□□ -0.44
SHMT1-206ENST00000579558 PDE6GP18545 87 aa12.29□□□□□ -0.44
SHMT1-206ENST00000579558 KRTAP10-6P60371 365 aaPredicted RBP12.28□□□□□ -0.44
SHMT1-206ENST00000579558 C14orf132Q9NPU4 83 aa12.28□□□□□ -0.44
SHMT1-206ENST00000579558 FLGP20930 4061 aaPredicted RBP12.27□□□□□ -0.45
SHMT1-206ENST00000579558 A0A1B0GW54 56 aa12.26□□□□□ -0.45
SHMT1-206ENST00000579558 C9orf118A6NHY6 69 aa12.26□□□□□ -0.45
SHMT1-206ENST00000579558 LORP23490 312 aaPredicted RBP12.26□□□□□ -0.45
SHMT1-206ENST00000579558 TAX1BP3O14907 124 aa12.23□□□□□ -0.45
SHMT1-206ENST00000579558 CRCT1Q9UGL9 99 aa12.22□□□□□ -0.45
SHMT1-206ENST00000579558 NDUFB1O75438 58 aa12.21□□□□□ -0.45
SHMT1-206ENST00000579558 A0A1W2PPM0 123 aa12.2□□□□□ -0.46
SHMT1-206ENST00000579558 H3BT86 120 aa12.17□□□□□ -0.46
SHMT1-206ENST00000579558 A8MWP4 228 aa12.15□□□□□ -0.46
SHMT1-206ENST00000579558 MTURNQ8N3F0 131 aa12.15□□□□□ -0.46
SHMT1-206ENST00000579558 NREPQ16612 68 aa12.12□□□□□ -0.47
SHMT1-206ENST00000579558 IGKV3D-7A0A0C4DH55 119 aa12.11□□□□□ -0.47
SHMT1-206ENST00000579558 C8orf17Q9NRJ1 99 aa12.11□□□□□ -0.47
SHMT1-206ENST00000579558 ZCCHC13Q8WW36 166 aaKnown RBP12.09□□□□□ -0.47
SHMT1-206ENST00000579558 FAM236DA0A1B0GTK5 79 aa12.08□□□□□ -0.48
SHMT1-206ENST00000579558 FAM236CP0DP71 79 aa12.08□□□□□ -0.48
SHMT1-206ENST00000579558 HRES1P13985 223 aa12.07□□□□□ -0.48
SHMT1-206ENST00000579558 Q8N9P0 234 aaPredicted RBP12.07□□□□□ -0.48
SHMT1-206ENST00000579558 RBM12B-AS1Q9P1G2 102 aa12.06□□□□□ -0.48
SHMT1-206ENST00000579558 SPCS1Q9Y6A9 102 aa12.05□□□□□ -0.48
SHMT1-206ENST00000579558 PRR15Q8IV56 129 aa12.04□□□□□ -0.48
SHMT1-206ENST00000579558 MPLKIPQ8TAP9 179 aa12.03□□□□□ -0.48
SHMT1-206ENST00000579558 Q6ZVQ6 151 aa12.01□□□□□ -0.49
SHMT1-206ENST00000579558 COL5A1-AS1Q5SY13 56 aa11.97□□□□□ -0.49
SHMT1-206ENST00000579558 SPINK7P58062 85 aa11.96□□□□□ -0.49
SHMT1-206ENST00000579558 MMP24-AS1A0A0U1RRL7 71 aa11.95□□□□□ -0.5
SHMT1-206ENST00000579558 K7EQZ3 153 aa11.93□□□□□ -0.5
SHMT1-206ENST00000579558 SMCPP49901 116 aaPredicted RBP11.93□□□□□ -0.5
SHMT1-206ENST00000579558 TMEM254Q8TBM7 123 aa11.92□□□□□ -0.5
SHMT1-206ENST00000579558 BPY2O14599 106 aa11.91□□□□□ -0.5
SHMT1-206ENST00000579558 MRPL34Q9BQ48 92 aaKnown RBP11.91□□□□□ -0.5
SHMT1-206ENST00000579558 hDV103S1A0JD37 113 aa11.88□□□□□ -0.51
SHMT1-206ENST00000579558 KRTAP9-8Q9BYQ0 159 aa11.86□□□□□ -0.51
SHMT1-206ENST00000579558 K7EP34 96 aa11.85□□□□□ -0.51
SHMT1-206ENST00000579558 PRO0461Q9UI25 63 aa11.84□□□□□ -0.51
SHMT1-206ENST00000579558 NDUFS5O43920 106 aa11.83□□□□□ -0.52
SHMT1-206ENST00000579558 WFDC13Q8IUB5 93 aa11.8□□□□□ -0.52
SHMT1-206ENST00000579558 Q8N9L7 120 aa11.78□□□□□ -0.52
SHMT1-206ENST00000579558 PCP4L1A6NKN8 68 aa11.74□□□□□ -0.53
SHMT1-206ENST00000579558 UBL5Q9BZL1 73 aa11.73□□□□□ -0.53
SHMT1-206ENST00000579558 LINC00846Q9NV44 126 aa11.73□□□□□ -0.53
SHMT1-206ENST00000579558 CASC2Q6XLA1 102 aa11.72□□□□□ -0.53
SHMT1-206ENST00000579558 GTF2H5Q6ZYL4 71 aa11.72□□□□□ -0.53
SHMT1-206ENST00000579558 MT2AP02795 61 aa11.71□□□□□ -0.53
SHMT1-206ENST00000579558 HCG22E2RYF7 251 aa11.66□□□□□ -0.54
SHMT1-206ENST00000579558 Q5W150 140 aa11.65□□□□□ -0.54
SHMT1-206ENST00000579558 IGKV2D-30A0A075B6S6 120 aa11.63□□□□□ -0.55
SHMT1-206ENST00000579558 IGKV2-30P06310 120 aa11.63□□□□□ -0.55
SHMT1-206ENST00000579558 F8W1H4 67 aa11.62□□□□□ -0.55
SHMT1-206ENST00000579558 MT1FP04733 61 aa11.62□□□□□ -0.55
SHMT1-206ENST00000579558 C7orf65Q6ZTY9 151 aa11.61□□□□□ -0.55
SHMT1-206ENST00000579558 KRTAP10-10P60014 251 aa11.59□□□□□ -0.55
SHMT1-206ENST00000579558 USH2AO75445 5202 aa11.59□□□□□ -0.55
SHMT1-206ENST00000579558 ETDBQ3ZM63 59 aa11.58□□□□□ -0.56
SHMT1-206ENST00000579558 CXCL6P80162 114 aa11.57□□□□□ -0.56
SHMT1-206ENST00000579558 SSPOA2VEC9 5147 aa11.56□□□□□ -0.56
SHMT1-206ENST00000579558 H1FX-AS1Q4G0G2 97 aa11.53□□□□□ -0.56
SHMT1-206ENST00000579558 KRTAP9-3Q9BYQ3 159 aa11.48□□□□□ -0.57
SHMT1-206ENST00000579558 LCE2BO14633 110 aa11.42□□□□□ -0.58
SHMT1-206ENST00000579558 C4orf26Q17RF5 130 aa11.41□□□□□ -0.58
SHMT1-206ENST00000579558 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.39□□□□□ -0.59
SHMT1-206ENST00000579558 TP53AIP1Q9HCN2 124 aa11.37□□□□□ -0.59
SHMT1-206ENST00000579558 KRTAP9-7A8MTY7 169 aa11.33□□□□□ -0.6
SHMT1-206ENST00000579558 ACYP1P07311 99 aa11.32□□□□□ -0.6
SHMT1-206ENST00000579558 FCGBPQ9Y6R7 5405 aaPredicted RBP11.3□□□□□ -0.6
SHMT1-206ENST00000579558 FAM240AA0A1B0GVK7 77 aa11.26□□□□□ -0.61
SHMT1-206ENST00000579558 C1orf64Q8NEQ6 169 aa11.22□□□□□ -0.61
SHMT1-206ENST00000579558 KRTAP3-1Q9BYR8 98 aa11.22□□□□□ -0.61
SHMT1-206ENST00000579558 ATP5EP2Q5VTU8 51 aa11.21□□□□□ -0.61
SHMT1-206ENST00000579558 KRTAP19-1Q8IUB9 90 aa11.2□□□□□ -0.62
SHMT1-206ENST00000579558 HIST1H4AP62805 103 aaKnown RBP11.16□□□□□ -0.62
SHMT1-206ENST00000579558 C5orf47Q569G3 176 aa11.16□□□□□ -0.62
SHMT1-206ENST00000579558 S4R3F8 94 aa11.16□□□□□ -0.62
SHMT1-206ENST00000579558 TRAV22A0A0B4J277 110 aa11.14□□□□□ -0.63
SHMT1-206ENST00000579558 CYP4F30PQ9H0H9 118 aa11.12□□□□□ -0.63
SHMT1-206ENST00000579558 A0A1B0GV90 55 aa11.08□□□□□ -0.64
SHMT1-206ENST00000579558 LOC101927531A0A1B0GV80 90 aa11.07□□□□□ -0.64
SHMT1-206ENST00000579558 LCA10Q71F78 164 aa11.07□□□□□ -0.64
SHMT1-206ENST00000579558 CSAG1Q6PB30 78 aa11.06□□□□□ -0.64
SHMT1-206ENST00000579558 LINC00643Q86TS7 51 aa11.05□□□□□ -0.64
SHMT1-206ENST00000579558 UQCRQO14949 82 aa11.03□□□□□ -0.64
SHMT1-206ENST00000579558 A0A087WVE0 104 aa11.01□□□□□ -0.65
SHMT1-206ENST00000579558 FAM236AA0A1B0GUQ0 79 aa11.01□□□□□ -0.65
SHMT1-206ENST00000579558 FAM236BA0A1B0GV22 79 aa11.01□□□□□ -0.65
SHMT1-206ENST00000579558 MACF1Q9UPN3 7388 aaKnown RBP11.01□□□□□ -0.65
SHMT1-206ENST00000579558 KRTAP19-6Q3LI70 58 aa11□□□□□ -0.65
SHMT1-206ENST00000579558 H0Y9P7 68 aa10.99□□□□□ -0.65
SHMT1-206ENST00000579558 ATOX1O00244 68 aa10.97□□□□□ -0.65
SHMT1-206ENST00000579558 SYNE2Q8WXH0 6885 aaKnown RBP10.97□□□□□ -0.65
SHMT1-206ENST00000579558 KRTAP3-3Q9BYR6 98 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms