RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 Q6ZVQ6 151 aa9.36□□□□□ -0.91
NUP88-210ENST00000574867 UBL5Q9BZL1 73 aa9.36□□□□□ -0.91
NUP88-210ENST00000574867 XP32Q5T750 250 aa9.36□□□□□ -0.91
NUP88-210ENST00000574867 LINC00846Q9NV44 126 aa9.36□□□□□ -0.91
NUP88-210ENST00000574867 FAM240AA0A1B0GVK7 77 aa9.33□□□□□ -0.92
NUP88-210ENST00000574867 A0A1B0GVX0 72 aa9.33□□□□□ -0.92
NUP88-210ENST00000574867 NDUFB1O75438 58 aa9.33□□□□□ -0.92
NUP88-210ENST00000574867 ACYP1P07311 99 aa9.33□□□□□ -0.92
NUP88-210ENST00000574867 A8MWP4 228 aa9.32□□□□□ -0.92
NUP88-210ENST00000574867 IGHV6-1A0A0B4J1U7 121 aa9.31□□□□□ -0.92
NUP88-210ENST00000574867 BPY2O14599 106 aa9.31□□□□□ -0.92
NUP88-210ENST00000574867 C8orf87E5RJ46 101 aa9.3□□□□□ -0.92
NUP88-210ENST00000574867 DSCR10P59022 87 aa9.29□□□□□ -0.92
NUP88-210ENST00000574867 LINC00313P59037 77 aa9.29□□□□□ -0.92
NUP88-210ENST00000574867 UBR4Q5T4S7 5183 aa9.28□□□□□ -0.92
NUP88-210ENST00000574867 IGKV3D-7A0A0C4DH55 119 aa9.27□□□□□ -0.93
NUP88-210ENST00000574867 PRR15Q8IV56 129 aa9.26□□□□□ -0.93
NUP88-210ENST00000574867 SEC61BP60468 96 aaKnown RBP9.24□□□□□ -0.93
NUP88-210ENST00000574867 K7EQZ3 153 aa9.23□□□□□ -0.93
NUP88-210ENST00000574867 RPL37P61927 97 aaKnown RBP9.23□□□□□ -0.93
NUP88-210ENST00000574867 NOTCH2NLQ7Z3S9 236 aa9.23□□□□□ -0.93
NUP88-210ENST00000574867 CCDC179H3BU77 68 aa9.22□□□□□ -0.93
NUP88-210ENST00000574867 Q75L30 129 aa9.22□□□□□ -0.93
NUP88-210ENST00000574867 KRTAP16-1A8MUX0 517 aa9.21□□□□□ -0.93
NUP88-210ENST00000574867 C20orf166-AS1Q96NR2 134 aa9.21□□□□□ -0.93
NUP88-210ENST00000574867 C8orf17Q9NRJ1 99 aa9.21□□□□□ -0.93
NUP88-210ENST00000574867 CXCL6P80162 114 aa9.2□□□□□ -0.94
NUP88-210ENST00000574867 A8MUU9 505 aa9.19□□□□□ -0.94
NUP88-210ENST00000574867 ATP5EP2Q5VTU8 51 aa9.16□□□□□ -0.94
NUP88-210ENST00000574867 Q8N9L7 120 aa9.16□□□□□ -0.94
NUP88-210ENST00000574867 MMP24-AS1A0A0U1RRL7 71 aa9.16□□□□□ -0.94
NUP88-210ENST00000574867 MUC17Q685J3 4493 aa9.15□□□□□ -0.94
NUP88-210ENST00000574867 PCOTHQ58A44 107 aa9.13□□□□□ -0.95
NUP88-210ENST00000574867 SMIM20Q8N5G0 67 aa9.13□□□□□ -0.95
NUP88-210ENST00000574867 ATP11AUNQ6ZP68 121 aa9.12□□□□□ -0.95
NUP88-210ENST00000574867 LINC00643Q86TS7 51 aa9.12□□□□□ -0.95
NUP88-210ENST00000574867 TMEM254Q8TBM7 123 aa9.12□□□□□ -0.95
NUP88-210ENST00000574867 hDV103S1A0JD37 113 aa9.11□□□□□ -0.95
NUP88-210ENST00000574867 Q8N9P0 234 aaPredicted RBP9.1□□□□□ -0.95
NUP88-210ENST00000574867 MRPL34Q9BQ48 92 aaKnown RBP9.09□□□□□ -0.95
NUP88-210ENST00000574867 IMUPQ9GZP8 106 aa9.09□□□□□ -0.95
NUP88-210ENST00000574867 RNF213Q63HN8 5207 aa9.07□□□□□ -0.96
NUP88-210ENST00000574867 CASC2Q6XLA1 102 aa9.07□□□□□ -0.96
NUP88-210ENST00000574867 FAM236AA0A1B0GUQ0 79 aa9.06□□□□□ -0.96
NUP88-210ENST00000574867 FAM236BA0A1B0GV22 79 aa9.06□□□□□ -0.96
NUP88-210ENST00000574867 HCG22E2RYF7 251 aa9.06□□□□□ -0.96
NUP88-210ENST00000574867 WFDC13Q8IUB5 93 aa9.06□□□□□ -0.96
NUP88-210ENST00000574867 NDUFS5O43920 106 aa9□□□□□ -0.97
NUP88-210ENST00000574867 HIST1H4AP62805 103 aaKnown RBP9□□□□□ -0.97
NUP88-210ENST00000574867 ZCCHC13Q8WW36 166 aaKnown RBP9□□□□□ -0.97
NUP88-210ENST00000574867 KRTAP4-1Q9BYQ7 146 aa9□□□□□ -0.97
NUP88-210ENST00000574867 UQCRQO14949 82 aa8.99□□□□□ -0.97
NUP88-210ENST00000574867 MUC2Q02817 5179 aa8.96□□□□□ -0.97
NUP88-210ENST00000574867 COX7CP15954 63 aa8.92□□□□□ -0.98
NUP88-210ENST00000574867 ATOX1O00244 68 aa8.91□□□□□ -0.98
NUP88-210ENST00000574867 A0A087WVE0 104 aa8.9□□□□□ -0.98
NUP88-210ENST00000574867 A0A0U1RQV1 116 aa8.9□□□□□ -0.98
NUP88-210ENST00000574867 TP53AIP1Q9HCN2 124 aa8.89□□□□□ -0.99
NUP88-210ENST00000574867 Q5W150 140 aa8.83□□□□□ -1
NUP88-210ENST00000574867 SPINK7P58062 85 aa8.81□□□□□ -1
NUP88-210ENST00000574867 RPS28P62857 69 aaKnown RBP8.81□□□□□ -1
NUP88-210ENST00000574867 SERP2Q8N6R1 65 aa8.8□□□□□ -1
NUP88-210ENST00000574867 TMEM258P61165 79 aa8.79□□□□□ -1
NUP88-210ENST00000574867 C5orf47Q569G3 176 aa8.78□□□□□ -1
NUP88-210ENST00000574867 C7orf65Q6ZTY9 151 aa8.76□□□□□ -1.01
NUP88-210ENST00000574867 CYSTM1Q9H1C7 97 aa8.76□□□□□ -1.01
NUP88-210ENST00000574867 HRES1P13985 223 aa8.75□□□□□ -1.01
NUP88-210ENST00000574867 TRAV22A0A0B4J277 110 aa8.74□□□□□ -1.01
NUP88-210ENST00000574867 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
NUP88-210ENST00000574867 IGKV2D-30A0A075B6S6 120 aa8.73□□□□□ -1.01
NUP88-210ENST00000574867 IGKV2-30P06310 120 aa8.73□□□□□ -1.01
NUP88-210ENST00000574867 COX6B2Q6YFQ2 88 aa8.71□□□□□ -1.01
NUP88-210ENST00000574867 FAT4Q6V0I7 4981 aa8.71□□□□□ -1.01
NUP88-210ENST00000574867 MPLKIPQ8TAP9 179 aa8.71□□□□□ -1.02
NUP88-210ENST00000574867 RBM12B-AS1Q9P1G2 102 aa8.71□□□□□ -1.02
NUP88-210ENST00000574867 OCR1Q9BZK8 76 aa8.7□□□□□ -1.02
NUP88-210ENST00000574867 LCE2CQ5TA81 110 aa8.68□□□□□ -1.02
NUP88-210ENST00000574867 H0Y9P7 68 aa8.65□□□□□ -1.02
NUP88-210ENST00000574867 LOC101927531A0A1B0GV80 90 aa8.65□□□□□ -1.03
NUP88-210ENST00000574867 FAM236DA0A1B0GTK5 79 aa8.64□□□□□ -1.03
NUP88-210ENST00000574867 FAM236CP0DP71 79 aa8.64□□□□□ -1.03
NUP88-210ENST00000574867 MP68P56378 58 aa8.61□□□□□ -1.03
NUP88-210ENST00000574867 LCE2AQ5TA79 106 aaPredicted RBP8.59□□□□□ -1.03
NUP88-210ENST00000574867 CYP4F30PQ9H0H9 118 aa8.59□□□□□ -1.03
NUP88-210ENST00000574867 C20orf197Q8N268 126 aa8.58□□□□□ -1.04
NUP88-210ENST00000574867 MT1HP80294 61 aa8.57□□□□□ -1.04
NUP88-210ENST00000574867 C4orf26Q17RF5 130 aa8.57□□□□□ -1.04
NUP88-210ENST00000574867 C1orf64Q8NEQ6 169 aa8.56□□□□□ -1.04
NUP88-210ENST00000574867 H3BPC8 53 aa8.55□□□□□ -1.04
NUP88-210ENST00000574867 TRAV7A0A075B6U4 112 aa8.55□□□□□ -1.04
NUP88-210ENST00000574867 LINC00208Q96KT6 92 aa8.55□□□□□ -1.04
NUP88-210ENST00000574867 H7BZZ5 65 aa8.51□□□□□ -1.05
NUP88-210ENST00000574867 SERP1Q9Y6X1 66 aa8.51□□□□□ -1.05
NUP88-210ENST00000574867 KLKP1Q107X0 134 aa8.5□□□□□ -1.05
NUP88-210ENST00000574867 FLGP20930 4061 aaPredicted RBP8.49□□□□□ -1.05
NUP88-210ENST00000574867 M0R2T5 61 aa8.46□□□□□ -1.05
NUP88-210ENST00000574867 H1FX-AS1Q4G0G2 97 aa8.46□□□□□ -1.05
NUP88-210ENST00000574867 SNURFQ9Y675 71 aa8.44□□□□□ -1.06
NUP88-210ENST00000574867 NDUFC1O43677 76 aa8.43□□□□□ -1.06
NUP88-210ENST00000574867 ATP5EP56381 51 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms