RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C9JAW5 83 aa7.83□□□□□ -1.16
VPS39-210ENST00000568357 LINC00313P59037 77 aa7.83□□□□□ -1.16
VPS39-210ENST00000568357 KRTAP16-1A8MUX0 517 aa7.81□□□□□ -1.16
VPS39-210ENST00000568357 LORP23490 312 aaPredicted RBP7.81□□□□□ -1.16
VPS39-210ENST00000568357 JMJD7-PLA2G4BH0Y9G9 81 aa7.79□□□□□ -1.16
VPS39-210ENST00000568357 Q6ZQT0 140 aa7.79□□□□□ -1.16
VPS39-210ENST00000568357 TRBV20-1A0A075B6N2 111 aa7.78□□□□□ -1.16
VPS39-210ENST00000568357 IGHV6-1A0A0B4J1U7 121 aa7.78□□□□□ -1.16
VPS39-210ENST00000568357 COX6B2Q6YFQ2 88 aa7.78□□□□□ -1.16
VPS39-210ENST00000568357 LOC110117498A0A087WWA1 95 aa7.77□□□□□ -1.17
VPS39-210ENST00000568357 KRTAP10-6P60371 365 aaPredicted RBP7.77□□□□□ -1.17
VPS39-210ENST00000568357 LYRM7Q5U5X0 104 aa7.77□□□□□ -1.17
VPS39-210ENST00000568357 C9orf118A6NHY6 69 aa7.76□□□□□ -1.17
VPS39-210ENST00000568357 TAX1BP3O14907 124 aa7.76□□□□□ -1.17
VPS39-210ENST00000568357 C14orf132Q9NPU4 83 aa7.75□□□□□ -1.17
VPS39-210ENST00000568357 A0A1B0GVX0 72 aa7.74□□□□□ -1.17
VPS39-210ENST00000568357 C21orf62-AS1Q17RA5 79 aa7.74□□□□□ -1.17
VPS39-210ENST00000568357 PDE6GP18545 87 aa7.73□□□□□ -1.17
VPS39-210ENST00000568357 A0A1W2PPM0 123 aa7.72□□□□□ -1.17
VPS39-210ENST00000568357 J3KT08 172 aa7.72□□□□□ -1.17
VPS39-210ENST00000568357 A0A1B0GW54 56 aa7.71□□□□□ -1.18
VPS39-210ENST00000568357 FLGP20930 4061 aaPredicted RBP7.71□□□□□ -1.18
VPS39-210ENST00000568357 SSPOA2VEC9 5147 aa7.7□□□□□ -1.18
VPS39-210ENST00000568357 C8orf87E5RJ46 101 aa7.7□□□□□ -1.18
VPS39-210ENST00000568357 M0R2T5 61 aa7.69□□□□□ -1.18
VPS39-210ENST00000568357 MTURNQ8N3F0 131 aa7.69□□□□□ -1.18
VPS39-210ENST00000568357 H3BT86 120 aa7.66□□□□□ -1.18
VPS39-210ENST00000568357 A8MWP4 228 aa7.65□□□□□ -1.18
VPS39-210ENST00000568357 NDUFB1O75438 58 aa7.65□□□□□ -1.18
VPS39-210ENST00000568357 USH2AO75445 5202 aa7.65□□□□□ -1.18
VPS39-210ENST00000568357 IGKV3D-7A0A0C4DH55 119 aa7.64□□□□□ -1.19
VPS39-210ENST00000568357 NREPQ16612 68 aa7.63□□□□□ -1.19
VPS39-210ENST00000568357 C8orf17Q9NRJ1 99 aa7.62□□□□□ -1.19
VPS39-210ENST00000568357 SPCS1Q9Y6A9 102 aa7.61□□□□□ -1.19
VPS39-210ENST00000568357 Q8N9P0 234 aaPredicted RBP7.6□□□□□ -1.19
VPS39-210ENST00000568357 HRES1P13985 223 aa7.59□□□□□ -1.19
VPS39-210ENST00000568357 PRR15Q8IV56 129 aa7.59□□□□□ -1.19
VPS39-210ENST00000568357 ZCCHC13Q8WW36 166 aaKnown RBP7.59□□□□□ -1.19
VPS39-210ENST00000568357 MPLKIPQ8TAP9 179 aa7.58□□□□□ -1.2
VPS39-210ENST00000568357 COL5A1-AS1Q5SY13 56 aa7.57□□□□□ -1.2
VPS39-210ENST00000568357 Q6ZVQ6 151 aa7.55□□□□□ -1.2
VPS39-210ENST00000568357 FCGBPQ9Y6R7 5405 aaPredicted RBP7.53□□□□□ -1.2
VPS39-210ENST00000568357 SYNE2Q8WXH0 6885 aaKnown RBP7.53□□□□□ -1.2
VPS39-210ENST00000568357 MMP24-AS1A0A0U1RRL7 71 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 FAM236DA0A1B0GTK5 79 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 FAM236CP0DP71 79 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 SPINK7P58062 85 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 RBM12B-AS1Q9P1G2 102 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 PRO0461Q9UI25 63 aa7.52□□□□□ -1.21
VPS39-210ENST00000568357 K7EQZ3 153 aa7.51□□□□□ -1.21
VPS39-210ENST00000568357 K7EP34 96 aa7.5□□□□□ -1.21
VPS39-210ENST00000568357 MACF1Q9UPN3 7388 aaKnown RBP7.49□□□□□ -1.21
VPS39-210ENST00000568357 BPY2O14599 106 aa7.49□□□□□ -1.21
VPS39-210ENST00000568357 TMEM254Q8TBM7 123 aa7.49□□□□□ -1.21
VPS39-210ENST00000568357 MRPL34Q9BQ48 92 aaKnown RBP7.48□□□□□ -1.21
VPS39-210ENST00000568357 KRTAP9-8Q9BYQ0 159 aa7.47□□□□□ -1.21
VPS39-210ENST00000568357 hDV103S1A0JD37 113 aa7.46□□□□□ -1.22
VPS39-210ENST00000568357 PCP4L1A6NKN8 68 aa7.46□□□□□ -1.22
VPS39-210ENST00000568357 Q8N9L7 120 aa7.44□□□□□ -1.22
VPS39-210ENST00000568357 LINC00846Q9NV44 126 aa7.42□□□□□ -1.22
VPS39-210ENST00000568357 NDUFS5O43920 106 aa7.41□□□□□ -1.22
VPS39-210ENST00000568357 GTF2H5Q6ZYL4 71 aa7.39□□□□□ -1.23
VPS39-210ENST00000568357 WFDC13Q8IUB5 93 aa7.39□□□□□ -1.23
VPS39-210ENST00000568357 KRTAP19-1Q8IUB9 90 aa7.38□□□□□ -1.23
VPS39-210ENST00000568357 Q5W150 140 aa7.37□□□□□ -1.23
VPS39-210ENST00000568357 CASC2Q6XLA1 102 aa7.37□□□□□ -1.23
VPS39-210ENST00000568357 F8W1H4 67 aa7.36□□□□□ -1.23
VPS39-210ENST00000568357 MT2AP02795 61 aa7.36□□□□□ -1.23
VPS39-210ENST00000568357 UBL5Q9BZL1 73 aa7.36□□□□□ -1.23
VPS39-210ENST00000568357 ETDBQ3ZM63 59 aa7.33□□□□□ -1.24
VPS39-210ENST00000568357 HCG22E2RYF7 251 aa7.32□□□□□ -1.24
VPS39-210ENST00000568357 MT1FP04733 61 aa7.3□□□□□ -1.24
VPS39-210ENST00000568357 IGKV2D-30A0A075B6S6 120 aa7.29□□□□□ -1.24
VPS39-210ENST00000568357 IGKV2-30P06310 120 aa7.29□□□□□ -1.24
VPS39-210ENST00000568357 KRTAP10-10P60014 251 aa7.26□□□□□ -1.25
VPS39-210ENST00000568357 CXCL6P80162 114 aa7.26□□□□□ -1.25
VPS39-210ENST00000568357 C7orf65Q6ZTY9 151 aa7.25□□□□□ -1.25
VPS39-210ENST00000568357 H1FX-AS1Q4G0G2 97 aa7.24□□□□□ -1.25
VPS39-210ENST00000568357 KRTAP9-3Q9BYQ3 159 aa7.23□□□□□ -1.25
VPS39-210ENST00000568357 C4orf26Q17RF5 130 aa7.19□□□□□ -1.26
VPS39-210ENST00000568357 KRTAP4-8Q9BYQ9 185 aa7.17□□□□□ -1.26
VPS39-210ENST00000568357 ACYP1P07311 99 aa7.14□□□□□ -1.27
VPS39-210ENST00000568357 TP53AIP1Q9HCN2 124 aa7.14□□□□□ -1.27
VPS39-210ENST00000568357 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
VPS39-210ENST00000568357 NEBP20929 6669 aa7.12□□□□□ -1.27
VPS39-210ENST00000568357 KRTAP3-1Q9BYR8 98 aa7.11□□□□□ -1.27
VPS39-210ENST00000568357 FAM240AA0A1B0GVK7 77 aa7.1□□□□□ -1.27
VPS39-210ENST00000568357 A0A1B0GV90 55 aa7.06□□□□□ -1.28
VPS39-210ENST00000568357 KRTAP19-6Q3LI70 58 aa7.05□□□□□ -1.28
VPS39-210ENST00000568357 C1orf64Q8NEQ6 169 aa7.05□□□□□ -1.28
VPS39-210ENST00000568357 ATP5EP2Q5VTU8 51 aa7.04□□□□□ -1.28
VPS39-210ENST00000568357 HIST1H4AP62805 103 aaKnown RBP7.03□□□□□ -1.28
VPS39-210ENST00000568357 CYP4F30PQ9H0H9 118 aa7.02□□□□□ -1.29
VPS39-210ENST00000568357 C5orf47Q569G3 176 aa7□□□□□ -1.29
VPS39-210ENST00000568357 TRAV22A0A0B4J277 110 aa6.98□□□□□ -1.29
VPS39-210ENST00000568357 LINC00643Q86TS7 51 aa6.98□□□□□ -1.29
VPS39-210ENST00000568357 S4R3F8 94 aa6.98□□□□□ -1.29
VPS39-210ENST00000568357 A0A087WVE0 104 aa6.97□□□□□ -1.29
VPS39-210ENST00000568357 LCA10Q71F78 164 aa6.96□□□□□ -1.3
VPS39-210ENST00000568357 LOC101927531A0A1B0GV80 90 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms