RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 A0A1B0GVX0 72 aa8.19□□□□□ -1.1
CLN3-211ENST00000564091 C8orf87E5RJ46 101 aa8.19□□□□□ -1.1
CLN3-211ENST00000564091 S100A1P23297 94 aa8.19□□□□□ -1.1
CLN3-211ENST00000564091 PSMB2P49721 201 aa8.19□□□□□ -1.1
CLN3-211ENST00000564091 K7ERJ3 54 aa8.18□□□□□ -1.1
CLN3-211ENST00000564091 SPINK7P58062 85 aa8.18□□□□□ -1.1
CLN3-211ENST00000564091 ZCCHC13Q8WW36 166 aaKnown RBP8.18□□□□□ -1.1
CLN3-211ENST00000564091 VPS25Q9BRG1 176 aa8.18□□□□□ -1.1
CLN3-211ENST00000564091 UBE2V1Q13404 147 aa8.15□□□□□ -1.1
CLN3-211ENST00000564091 KRTAP19-6Q3LI70 58 aa8.14□□□□□ -1.11
CLN3-211ENST00000564091 COX6CP09669 75 aa8.13□□□□□ -1.11
CLN3-211ENST00000564091 LINC00846Q9NV44 126 aa8.12□□□□□ -1.11
CLN3-211ENST00000564091 RBM3P98179 157 aaKnown RBP8.1□□□□□ -1.11
CLN3-211ENST00000564091 HSD52Q0P140 79 aa8.1□□□□□ -1.11
CLN3-211ENST00000564091 DSCR8Q96T75 97 aa8.09□□□□□ -1.11
CLN3-211ENST00000564091 WFDC13Q8IUB5 93 aa8.08□□□□□ -1.12
CLN3-211ENST00000564091 A8MWP4 228 aa8.07□□□□□ -1.12
CLN3-211ENST00000564091 J3KT08 172 aa8.07□□□□□ -1.12
CLN3-211ENST00000564091 Q8N9P0 234 aaPredicted RBP8.07□□□□□ -1.12
CLN3-211ENST00000564091 Q6ZQT0 140 aa8.04□□□□□ -1.12
CLN3-211ENST00000564091 NDUFB1O75438 58 aa8.03□□□□□ -1.12
CLN3-211ENST00000564091 SCGB1C2P0DMR2 95 aa8.03□□□□□ -1.12
CLN3-211ENST00000564091 LYRM7Q5U5X0 104 aa8.03□□□□□ -1.12
CLN3-211ENST00000564091 C9JAW5 83 aa8.02□□□□□ -1.13
CLN3-211ENST00000564091 C8orf17Q9NRJ1 99 aa8.01□□□□□ -1.13
CLN3-211ENST00000564091 BAALC-AS2P0C853 105 aa8□□□□□ -1.13
CLN3-211ENST00000564091 PYY3Q5JQD4 70 aa7.99□□□□□ -1.13
CLN3-211ENST00000564091 C21orf62-AS1Q17RA5 79 aa7.98□□□□□ -1.13
CLN3-211ENST00000564091 IGKV3D-7A0A0C4DH55 119 aa7.97□□□□□ -1.13
CLN3-211ENST00000564091 NEBP20929 6669 aa7.95□□□□□ -1.14
CLN3-211ENST00000564091 KRTAP6-3Q3LI67 103 aa7.94□□□□□ -1.14
CLN3-211ENST00000564091 Q6ZVQ6 151 aa7.94□□□□□ -1.14
CLN3-211ENST00000564091 UQCR10Q9UDW1 63 aa7.92□□□□□ -1.14
CLN3-211ENST00000564091 H1FX-AS1Q4G0G2 97 aa7.91□□□□□ -1.14
CLN3-211ENST00000564091 PRR15Q8IV56 129 aa7.89□□□□□ -1.15
CLN3-211ENST00000564091 LOC110117498A0A087WWA1 95 aa7.87□□□□□ -1.15
CLN3-211ENST00000564091 JMJD7-PLA2G4BH0Y9G9 81 aa7.87□□□□□ -1.15
CLN3-211ENST00000564091 A0A1B0GW54 56 aa7.86□□□□□ -1.15
CLN3-211ENST00000564091 MRPL34Q9BQ48 92 aaKnown RBP7.85□□□□□ -1.15
CLN3-211ENST00000564091 MMP24-AS1A0A0U1RRL7 71 aa7.84□□□□□ -1.15
CLN3-211ENST00000564091 TMEM254Q8TBM7 123 aa7.84□□□□□ -1.15
CLN3-211ENST00000564091 NAA38Q9BRA0 125 aaKnown RBP7.84□□□□□ -1.15
CLN3-211ENST00000564091 C14orf132Q9NPU4 83 aa7.84□□□□□ -1.15
CLN3-211ENST00000564091 ATXN8Q156A1 80 aa7.83□□□□□ -1.16
CLN3-211ENST00000564091 MUC12Q9UKN1 5478 aa7.83□□□□□ -1.16
CLN3-211ENST00000564091 NREPQ16612 68 aa7.82□□□□□ -1.16
CLN3-211ENST00000564091 NDUFS5O43920 106 aa7.81□□□□□ -1.16
CLN3-211ENST00000564091 PDE6GP18545 87 aa7.81□□□□□ -1.16
CLN3-211ENST00000564091 IGKV2D-30A0A075B6S6 120 aa7.79□□□□□ -1.16
CLN3-211ENST00000564091 hDV103S1A0JD37 113 aa7.79□□□□□ -1.16
CLN3-211ENST00000564091 IGKV2-30P06310 120 aa7.79□□□□□ -1.16
CLN3-211ENST00000564091 K7EQZ3 153 aa7.77□□□□□ -1.17
CLN3-211ENST00000564091 Q5W150 140 aa7.76□□□□□ -1.17
CLN3-211ENST00000564091 C7orf65Q6ZTY9 151 aa7.73□□□□□ -1.17
CLN3-211ENST00000564091 C4orf26Q17RF5 130 aa7.69□□□□□ -1.18
CLN3-211ENST00000564091 TMA7Q9Y2S6 64 aaKnown RBP7.69□□□□□ -1.18
CLN3-211ENST00000564091 M0R143 59 aa7.68□□□□□ -1.18
CLN3-211ENST00000564091 A6NN06 94 aa7.67□□□□□ -1.18
CLN3-211ENST00000564091 C5orf47Q569G3 176 aa7.67□□□□□ -1.18
CLN3-211ENST00000564091 BPY2O14599 106 aa7.65□□□□□ -1.18
CLN3-211ENST00000564091 MT1BP07438 61 aa7.65□□□□□ -1.18
CLN3-211ENST00000564091 FAM236AA0A1B0GUQ0 79 aa7.64□□□□□ -1.19
CLN3-211ENST00000564091 FAM236BA0A1B0GV22 79 aa7.64□□□□□ -1.19
CLN3-211ENST00000564091 Q8N9L7 120 aa7.63□□□□□ -1.19
CLN3-211ENST00000564091 HCG22E2RYF7 251 aa7.62□□□□□ -1.19
CLN3-211ENST00000564091 Q5VV11 94 aa7.6□□□□□ -1.19
CLN3-211ENST00000564091 CASC2Q6XLA1 102 aa7.6□□□□□ -1.19
CLN3-211ENST00000564091 KRTAP3-1Q9BYR8 98 aa7.59□□□□□ -1.19
CLN3-211ENST00000564091 MDN1Q9NU22 5596 aa7.59□□□□□ -1.2
CLN3-211ENST00000564091 KRTAP19-8Q3LI54 63 aa7.57□□□□□ -1.2
CLN3-211ENST00000564091 SPRR2GQ9BYE4 73 aa7.56□□□□□ -1.2
CLN3-211ENST00000564091 KMT2DO14686 5537 aa7.56□□□□□ -1.2
CLN3-211ENST00000564091 S4R3F8 94 aa7.55□□□□□ -1.2
CLN3-211ENST00000564091 H3BT86 120 aa7.54□□□□□ -1.2
CLN3-211ENST00000564091 CXCL6P80162 114 aa7.54□□□□□ -1.2
CLN3-211ENST00000564091 CSAG1Q6PB30 78 aa7.54□□□□□ -1.2
CLN3-211ENST00000564091 BATFQ16520 125 aa7.53□□□□□ -1.2
CLN3-211ENST00000564091 KRTAP10-5P60370 271 aa7.52□□□□□ -1.21
CLN3-211ENST00000564091 TSTD3H0UI37 97 aa7.51□□□□□ -1.21
CLN3-211ENST00000564091 LCA10Q71F78 164 aa7.51□□□□□ -1.21
CLN3-211ENST00000564091 KRTAP20-1Q3LI63 56 aa7.5□□□□□ -1.21
CLN3-211ENST00000564091 C1orf64Q8NEQ6 169 aa7.5□□□□□ -1.21
CLN3-211ENST00000564091 C9orf118A6NHY6 69 aa7.46□□□□□ -1.22
CLN3-211ENST00000564091 A0A1W2PPM0 123 aa7.44□□□□□ -1.22
CLN3-211ENST00000564091 KRTAP5-9P26371 169 aa7.44□□□□□ -1.22
CLN3-211ENST00000564091 KLKP1Q107X0 134 aa7.44□□□□□ -1.22
CLN3-211ENST00000564091 TAX1BP3O14907 124 aa7.42□□□□□ -1.22
CLN3-211ENST00000564091 SMIM6P0DI80 62 aa7.38□□□□□ -1.23
CLN3-211ENST00000564091 KRTAP3-3Q9BYR6 98 aa7.38□□□□□ -1.23
CLN3-211ENST00000564091 SMCPP49901 116 aaPredicted RBP7.36□□□□□ -1.23
CLN3-211ENST00000564091 UBL5Q9BZL1 73 aa7.35□□□□□ -1.23
CLN3-211ENST00000564091 IMUPQ9GZP8 106 aa7.35□□□□□ -1.23
CLN3-211ENST00000564091 SPCS1Q9Y6A9 102 aa7.32□□□□□ -1.24
CLN3-211ENST00000564091 A0A087WVE0 104 aa7.3□□□□□ -1.24
CLN3-211ENST00000564091 TP53AIP1Q9HCN2 124 aa7.3□□□□□ -1.24
CLN3-211ENST00000564091 CRIPTQ9P021 101 aa7.29□□□□□ -1.24
CLN3-211ENST00000564091 CYP4F30PQ9H0H9 118 aa7.25□□□□□ -1.25
CLN3-211ENST00000564091 PRO0461Q9UI25 63 aa7.23□□□□□ -1.25
CLN3-211ENST00000564091 KRTAP2-3P0C7H8 128 aa7.22□□□□□ -1.25
CLN3-211ENST00000564091 KRTAP2-4Q9BYR9 128 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms