RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 Q5XG85 94 aa2.87□□□□□ -1.95
RTF1-204ENST00000558117 COX6B2Q6YFQ2 88 aa2.87□□□□□ -1.95
RTF1-204ENST00000558117 Q8NDZ9 215 aa2.87□□□□□ -1.95
RTF1-204ENST00000558117 LINC00474Q9P2X8 69 aa2.87□□□□□ -1.95
RTF1-204ENST00000558117 CDKN2A-AS1Q9UH64 79 aa2.87□□□□□ -1.95
RTF1-204ENST00000558117 LINC01549A6NIU2 74 aa2.86□□□□□ -1.95
RTF1-204ENST00000558117 LINC00587B1AMM8 73 aa2.86□□□□□ -1.95
RTF1-204ENST00000558117 C9JAW5 83 aa2.86□□□□□ -1.95
RTF1-204ENST00000558117 J3QQQ9 107 aa2.86□□□□□ -1.95
RTF1-204ENST00000558117 MT1FP04733 61 aa2.86□□□□□ -1.95
RTF1-204ENST00000558117 RPL28P46779 137 aaKnown RBP2.86□□□□□ -1.95
RTF1-204ENST00000558117 A0A1W2PNN7 141 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 H3BT86 120 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 CRPP02741 224 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 ZNF25P17030 456 aaPredicted RBP2.85□□□□□ -1.95
RTF1-204ENST00000558117 LGALS3P17931 250 aaKnown RBP2.85□□□□□ -1.95
RTF1-204ENST00000558117 FP248Q71RG6 208 aaPredicted RBP2.85□□□□□ -1.95
RTF1-204ENST00000558117 LINC00526Q96FQ7 95 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 ZNF625Q96I27 306 aaPredicted RBP2.85□□□□□ -1.95
RTF1-204ENST00000558117 VPS25Q9BRG1 176 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 TOMM7Q9P0U1 55 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 AHNAK2Q8IVF2 5795 aa2.85□□□□□ -1.95
RTF1-204ENST00000558117 MYMXA0A1B0GTQ4 84 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 A0A1B0GV90 55 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 ZNF815PA8K554 130 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 H3BRM9 83 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 COX8AP10176 69 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 HINT1P49773 126 aaPredicted RBP2.84□□□□□ -1.95
RTF1-204ENST00000558117 PHF5AQ7RTV0 110 aaKnown RBP2.84□□□□□ -1.95
RTF1-204ENST00000558117 UQCR10Q9UDW1 63 aa2.84□□□□□ -1.95
RTF1-204ENST00000558117 IGHV1-58A0A0C4DH39 117 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 TRBV7-6A0A0J9YX20 115 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 NPC2P61916 151 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 KRTAP13-2Q52LG2 175 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 C2orf82Q6UX34 121 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 LINC00304Q8N9R0 145 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 COX7B2Q8TF08 81 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 R4GN34 69 aa2.83□□□□□ -1.96
RTF1-204ENST00000558117 DSTQ03001 7570 aaKnown RBP2.82□□□□□ -1.96
RTF1-204ENST00000558117 TRAV7A0A075B6U4 112 aa2.82□□□□□ -1.96
RTF1-204ENST00000558117 LOC107984640A0A0U1RRK4 108 aa2.82□□□□□ -1.96
RTF1-204ENST00000558117 SEC11AP67812 179 aa2.82□□□□□ -1.96
RTF1-204ENST00000558117 PCOTHQ58A44 107 aa2.82□□□□□ -1.96
RTF1-204ENST00000558117 C9orf116Q5BN46 136 aaPredicted RBP2.82□□□□□ -1.96
RTF1-204ENST00000558117 NDUFA12Q9UI09 145 aa2.82□□□□□ -1.96
RTF1-204ENST00000558117 SMIM13P0DJ93 91 aa2.81□□□□□ -1.96
RTF1-204ENST00000558117 SPAG11BQ08648 103 aa2.81□□□□□ -1.96
RTF1-204ENST00000558117 UNQ6190/PRO20217Q6UXQ8 127 aa2.81□□□□□ -1.96
RTF1-204ENST00000558117 K7ERJ3 54 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 NDUFA1O15239 70 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 DLEU1O43261 78 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 TCL1BO95988 128 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 LINC00158P58513 81 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 MEIG1Q5JSS6 88 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 MUSTN1Q8IVN3 82 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 SNHG12Q9BXW3 62 aa2.8□□□□□ -1.96
RTF1-204ENST00000558117 M0R143 59 aa2.79□□□□□ -1.96
RTF1-204ENST00000558117 FABP2P12104 132 aa2.79□□□□□ -1.96
RTF1-204ENST00000558117 HSD52Q0P140 79 aa2.79□□□□□ -1.96
RTF1-204ENST00000558117 BVES-AS1Q5T3Y7 98 aa2.79□□□□□ -1.96
RTF1-204ENST00000558117 NAA38Q9BRA0 125 aaKnown RBP2.79□□□□□ -1.96
RTF1-204ENST00000558117 HMCN1Q96RW7 5635 aa2.79□□□□□ -1.96
RTF1-204ENST00000558117 TRBV10-2A0A0K0K1G8 114 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 H7C2G1 150 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 FXYD2P54710 66 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 SOSTDC1Q6X4U4 206 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 Q8IZM0 81 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 RAB37Q96AX2 223 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 HIGD2AQ9BW72 106 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 HIGD1BQ9P298 99 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 C6orf48Q9UBA6 75 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 ERG28Q9UKR5 140 aa2.78□□□□□ -1.96
RTF1-204ENST00000558117 HRES1P13985 223 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 SPRR2EP22531 72 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 SPRR2BP35325 72 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 SPRR2AP35326 72 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 SFTA2Q6UW10 78 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 LINC00308Q8TCZ7 52 aa2.77□□□□□ -1.97
RTF1-204ENST00000558117 NHP2Q9NX24 153 aaKnown RBP2.77□□□□□ -1.97
RTF1-204ENST00000558117 BRK1Q8WUW1 75 aa2.76□□□□□ -1.97
RTF1-204ENST00000558117 GVQW2A0A096LPI5 108 aaPredicted RBP2.75□□□□□ -1.97
RTF1-204ENST00000558117 H3BMG7 143 aa2.75□□□□□ -1.97
RTF1-204ENST00000558117 NCR3O14931 201 aa2.75□□□□□ -1.97
RTF1-204ENST00000558117 TIMM17BO60830 172 aa2.75□□□□□ -1.97
RTF1-204ENST00000558117 COL5A1-AS1Q5SY13 56 aa2.75□□□□□ -1.97
RTF1-204ENST00000558117 SPANXDQ9BXN6 97 aa2.75□□□□□ -1.97
RTF1-204ENST00000558117 A0A1W2PNM2 257 aa2.74□□□□□ -1.97
RTF1-204ENST00000558117 KRTAP5-10Q6L8G5 202 aa2.74□□□□□ -1.97
RTF1-204ENST00000558117 C7orf65Q6ZTY9 151 aa2.74□□□□□ -1.97
RTF1-204ENST00000558117 TRBV30A0A0K0K1B3 111 aa2.73□□□□□ -1.97
RTF1-204ENST00000558117 H3BUT2 72 aa2.73□□□□□ -1.97
RTF1-204ENST00000558117 IFITM1P13164 125 aa2.73□□□□□ -1.97
RTF1-204ENST00000558117 Q6ZQT0 140 aa2.73□□□□□ -1.97
RTF1-204ENST00000558117 LOC107984156A0A0G2JMH3 177 aa2.72□□□□□ -1.97
RTF1-204ENST00000558117 COX17Q14061 63 aa2.72□□□□□ -1.97
RTF1-204ENST00000558117 KRTAP5-7Q6L8G8 165 aa2.72□□□□□ -1.97
RTF1-204ENST00000558117 ARL17AQ8IVW1 177 aa2.72□□□□□ -1.97
RTF1-204ENST00000558117 PRO1854Q9UHT4 67 aa2.72□□□□□ -1.97
RTF1-204ENST00000558117 COPS9Q8WXC6 57 aa2.71□□□□□ -1.98
RTF1-204ENST00000558117 TRBV10-3A0A0K0K1G6 114 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms