RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 IGKV3D-7A0A0C4DH55 119 aa6.93□□□□□ -1.3
SHMT2-227ENST00000557269 A0A1B0GVX0 72 aa6.93□□□□□ -1.3
SHMT2-227ENST00000557269 J3QR89 54 aa6.93□□□□□ -1.3
SHMT2-227ENST00000557269 A8MWP4 228 aa6.92□□□□□ -1.3
SHMT2-227ENST00000557269 LINC00313P59037 77 aa6.91□□□□□ -1.3
SHMT2-227ENST00000557269 KRTAP16-1A8MUX0 517 aa6.9□□□□□ -1.3
SHMT2-227ENST00000557269 BPY2O14599 106 aa6.9□□□□□ -1.3
SHMT2-227ENST00000557269 UBL5Q9BZL1 73 aa6.9□□□□□ -1.3
SHMT2-227ENST00000557269 MUC17Q685J3 4493 aa6.89□□□□□ -1.31
SHMT2-227ENST00000557269 K7EQZ3 153 aa6.88□□□□□ -1.31
SHMT2-227ENST00000557269 NDUFB1O75438 58 aa6.88□□□□□ -1.31
SHMT2-227ENST00000557269 RPL37P61927 97 aaKnown RBP6.88□□□□□ -1.31
SHMT2-227ENST00000557269 PRR15Q8IV56 129 aa6.88□□□□□ -1.31
SHMT2-227ENST00000557269 Q8N9L7 120 aa6.88□□□□□ -1.31
SHMT2-227ENST00000557269 FAM240AA0A1B0GVK7 77 aa6.87□□□□□ -1.31
SHMT2-227ENST00000557269 K7ERU9 68 aa6.87□□□□□ -1.31
SHMT2-227ENST00000557269 C8orf87E5RJ46 101 aa6.86□□□□□ -1.31
SHMT2-227ENST00000557269 ACYP1P07311 99 aa6.86□□□□□ -1.31
SHMT2-227ENST00000557269 C8orf17Q9NRJ1 99 aa6.86□□□□□ -1.31
SHMT2-227ENST00000557269 RNF213Q63HN8 5207 aa6.85□□□□□ -1.31
SHMT2-227ENST00000557269 A8MUU9 505 aa6.85□□□□□ -1.31
SHMT2-227ENST00000557269 SEC61BP60468 96 aaKnown RBP6.85□□□□□ -1.31
SHMT2-227ENST00000557269 PCOTHQ58A44 107 aa6.85□□□□□ -1.31
SHMT2-227ENST00000557269 Q75L30 129 aa6.85□□□□□ -1.31
SHMT2-227ENST00000557269 C20orf166-AS1Q96NR2 134 aa6.85□□□□□ -1.31
SHMT2-227ENST00000557269 KRTAP4-1Q9BYQ7 146 aa6.84□□□□□ -1.31
SHMT2-227ENST00000557269 MMP24-AS1A0A0U1RRL7 71 aa6.83□□□□□ -1.32
SHMT2-227ENST00000557269 CXCL6P80162 114 aa6.79□□□□□ -1.32
SHMT2-227ENST00000557269 MUC2Q02817 5179 aa6.77□□□□□ -1.33
SHMT2-227ENST00000557269 ATP11AUNQ6ZP68 121 aa6.77□□□□□ -1.33
SHMT2-227ENST00000557269 hDV103S1A0JD37 113 aa6.76□□□□□ -1.33
SHMT2-227ENST00000557269 WFDC13Q8IUB5 93 aa6.76□□□□□ -1.33
SHMT2-227ENST00000557269 Q8N9P0 234 aaPredicted RBP6.76□□□□□ -1.33
SHMT2-227ENST00000557269 TMEM254Q8TBM7 123 aa6.76□□□□□ -1.33
SHMT2-227ENST00000557269 MRPL34Q9BQ48 92 aaKnown RBP6.75□□□□□ -1.33
SHMT2-227ENST00000557269 CASC2Q6XLA1 102 aa6.74□□□□□ -1.33
SHMT2-227ENST00000557269 LINC00643Q86TS7 51 aa6.74□□□□□ -1.33
SHMT2-227ENST00000557269 HCG22E2RYF7 251 aa6.72□□□□□ -1.33
SHMT2-227ENST00000557269 ATP5EP2Q5VTU8 51 aa6.72□□□□□ -1.33
SHMT2-227ENST00000557269 ZCCHC13Q8WW36 166 aaKnown RBP6.69□□□□□ -1.34
SHMT2-227ENST00000557269 NDUFS5O43920 106 aa6.68□□□□□ -1.34
SHMT2-227ENST00000557269 HIST1H4AP62805 103 aaKnown RBP6.68□□□□□ -1.34
SHMT2-227ENST00000557269 A0A087WVE0 104 aa6.65□□□□□ -1.34
SHMT2-227ENST00000557269 Q5W150 140 aa6.64□□□□□ -1.35
SHMT2-227ENST00000557269 MT-ATP8P03928 68 aa6.62□□□□□ -1.35
SHMT2-227ENST00000557269 KRTAP19-2Q3LHN2 52 aa6.62□□□□□ -1.35
SHMT2-227ENST00000557269 SPINK7P58062 85 aa6.58□□□□□ -1.36
SHMT2-227ENST00000557269 LCE2CQ5TA81 110 aa6.58□□□□□ -1.36
SHMT2-227ENST00000557269 HRES1P13985 223 aa6.56□□□□□ -1.36
SHMT2-227ENST00000557269 FAT4Q6V0I7 4981 aa6.54□□□□□ -1.36
SHMT2-227ENST00000557269 IMUPQ9GZP8 106 aa6.54□□□□□ -1.36
SHMT2-227ENST00000557269 TP53AIP1Q9HCN2 124 aa6.54□□□□□ -1.36
SHMT2-227ENST00000557269 A0A0U1RQV1 116 aa6.53□□□□□ -1.36
SHMT2-227ENST00000557269 MPLKIPQ8TAP9 179 aa6.52□□□□□ -1.37
SHMT2-227ENST00000557269 IGKV2D-30A0A075B6S6 120 aa6.51□□□□□ -1.37
SHMT2-227ENST00000557269 IGKV2-30P06310 120 aa6.51□□□□□ -1.37
SHMT2-227ENST00000557269 SCGB1A1P11684 91 aa6.51□□□□□ -1.37
SHMT2-227ENST00000557269 LCE2AQ5TA79 106 aaPredicted RBP6.48□□□□□ -1.37
SHMT2-227ENST00000557269 OCR1Q9BZK8 76 aa6.48□□□□□ -1.37
SHMT2-227ENST00000557269 FAM236AA0A1B0GUQ0 79 aa6.47□□□□□ -1.37
SHMT2-227ENST00000557269 FAM236BA0A1B0GV22 79 aa6.47□□□□□ -1.37
SHMT2-227ENST00000557269 UQCRQO14949 82 aa6.47□□□□□ -1.37
SHMT2-227ENST00000557269 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
SHMT2-227ENST00000557269 C7orf65Q6ZTY9 151 aa6.47□□□□□ -1.37
SHMT2-227ENST00000557269 TRAV22A0A0B4J277 110 aa6.45□□□□□ -1.38
SHMT2-227ENST00000557269 MT1HP80294 61 aa6.45□□□□□ -1.38
SHMT2-227ENST00000557269 H0Y9P7 68 aa6.43□□□□□ -1.38
SHMT2-227ENST00000557269 RBM12B-AS1Q9P1G2 102 aa6.43□□□□□ -1.38
SHMT2-227ENST00000557269 FAM236DA0A1B0GTK5 79 aa6.41□□□□□ -1.38
SHMT2-227ENST00000557269 FAM236CP0DP71 79 aa6.41□□□□□ -1.38
SHMT2-227ENST00000557269 CYP4F30PQ9H0H9 118 aa6.4□□□□□ -1.38
SHMT2-227ENST00000557269 ATOX1O00244 68 aa6.38□□□□□ -1.39
SHMT2-227ENST00000557269 C4orf26Q17RF5 130 aa6.38□□□□□ -1.39
SHMT2-227ENST00000557269 LOC101927531A0A1B0GV80 90 aa6.37□□□□□ -1.39
SHMT2-227ENST00000557269 FLGP20930 4061 aaPredicted RBP6.37□□□□□ -1.39
SHMT2-227ENST00000557269 C5orf47Q569G3 176 aa6.36□□□□□ -1.39
SHMT2-227ENST00000557269 SMIM20Q8N5G0 67 aa6.36□□□□□ -1.39
SHMT2-227ENST00000557269 C1orf64Q8NEQ6 169 aa6.36□□□□□ -1.39
SHMT2-227ENST00000557269 LINC00208Q96KT6 92 aa6.36□□□□□ -1.39
SHMT2-227ENST00000557269 MP68P56378 58 aa6.33□□□□□ -1.4
SHMT2-227ENST00000557269 KRTAP3-1Q9BYR8 98 aa6.33□□□□□ -1.4
SHMT2-227ENST00000557269 TRAV7A0A075B6U4 112 aa6.32□□□□□ -1.4
SHMT2-227ENST00000557269 KLKP1Q107X0 134 aa6.31□□□□□ -1.4
SHMT2-227ENST00000557269 ANAPC13Q9BS18 74 aa6.31□□□□□ -1.4
SHMT2-227ENST00000557269 M0R2T5 61 aa6.3□□□□□ -1.4
SHMT2-227ENST00000557269 H1FX-AS1Q4G0G2 97 aa6.29□□□□□ -1.4
SHMT2-227ENST00000557269 SERP2Q8N6R1 65 aa6.28□□□□□ -1.4
SHMT2-227ENST00000557269 H3BPC8 53 aa6.27□□□□□ -1.41
SHMT2-227ENST00000557269 KRTAP10-6P60371 365 aaPredicted RBP6.26□□□□□ -1.41
SHMT2-227ENST00000557269 LORP23490 312 aaPredicted RBP6.24□□□□□ -1.41
SHMT2-227ENST00000557269 COX7CP15954 63 aa6.22□□□□□ -1.41
SHMT2-227ENST00000557269 C20orf197Q8N268 126 aa6.2□□□□□ -1.42
SHMT2-227ENST00000557269 SNURFQ9Y675 71 aa6.2□□□□□ -1.42
SHMT2-227ENST00000557269 KRTAP9-8Q9BYQ0 159 aa6.17□□□□□ -1.42
SHMT2-227ENST00000557269 LCA10Q71F78 164 aa6.15□□□□□ -1.42
SHMT2-227ENST00000557269 S4R3F8 94 aa6.15□□□□□ -1.42
SHMT2-227ENST00000557269 CCDC179H3BU77 68 aa6.13□□□□□ -1.43
SHMT2-227ENST00000557269 KRTAP3-3Q9BYR6 98 aa6.12□□□□□ -1.43
SHMT2-227ENST00000557269 A8MUN3 132 aa6.11□□□□□ -1.43
SHMT2-227ENST00000557269 MT2AP02795 61 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms