RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LYRM7Q5U5X0 104 aa8.22□□□□□ -1.09
CCDC88C-209ENST00000554872 A0A1B0GVX0 72 aa8.21□□□□□ -1.1
CCDC88C-209ENST00000554872 Q6ZQT0 140 aa8.21□□□□□ -1.1
CCDC88C-209ENST00000554872 TRBV20-1A0A075B6N2 111 aa8.2□□□□□ -1.1
CCDC88C-209ENST00000554872 IGHV6-1A0A0B4J1U7 121 aa8.2□□□□□ -1.1
CCDC88C-209ENST00000554872 TSTD3H0UI37 97 aa8.2□□□□□ -1.1
CCDC88C-209ENST00000554872 PDE6GP18545 87 aa8.2□□□□□ -1.1
CCDC88C-209ENST00000554872 NAA38Q9BRA0 125 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-209ENST00000554872 MPLKIPQ8TAP9 179 aa8.14□□□□□ -1.11
CCDC88C-209ENST00000554872 NDUFB1O75438 58 aa8.11□□□□□ -1.11
CCDC88C-209ENST00000554872 CRCT1Q9UGL9 99 aa8.11□□□□□ -1.11
CCDC88C-209ENST00000554872 A8MWP4 228 aa8.1□□□□□ -1.11
CCDC88C-209ENST00000554872 HRES1P13985 223 aa8.1□□□□□ -1.11
CCDC88C-209ENST00000554872 Q8N9P0 234 aaPredicted RBP8.1□□□□□ -1.11
CCDC88C-209ENST00000554872 LOC105371267A0A1B0GV96 52 aa8.09□□□□□ -1.11
CCDC88C-209ENST00000554872 C14orf132Q9NPU4 83 aa8.09□□□□□ -1.11
CCDC88C-209ENST00000554872 C9orf118A6NHY6 69 aa8.08□□□□□ -1.12
CCDC88C-209ENST00000554872 ZCCHC13Q8WW36 166 aaKnown RBP8.08□□□□□ -1.12
CCDC88C-209ENST00000554872 H3BT86 120 aa8.07□□□□□ -1.12
CCDC88C-209ENST00000554872 BATFQ16520 125 aa8.07□□□□□ -1.12
CCDC88C-209ENST00000554872 RBM12B-AS1Q9P1G2 102 aa8.06□□□□□ -1.12
CCDC88C-209ENST00000554872 IGKV3D-7A0A0C4DH55 119 aa8.05□□□□□ -1.12
CCDC88C-209ENST00000554872 TAX1BP3O14907 124 aa8.05□□□□□ -1.12
CCDC88C-209ENST00000554872 C8orf17Q9NRJ1 99 aa8.05□□□□□ -1.12
CCDC88C-209ENST00000554872 A0A1W2PPM0 123 aa8.04□□□□□ -1.12
CCDC88C-209ENST00000554872 KRTAP9-8Q9BYQ0 159 aa8.03□□□□□ -1.12
CCDC88C-209ENST00000554872 PRR15Q8IV56 129 aa8.02□□□□□ -1.13
CCDC88C-209ENST00000554872 FAM236DA0A1B0GTK5 79 aa8.01□□□□□ -1.13
CCDC88C-209ENST00000554872 FAM236CP0DP71 79 aa8.01□□□□□ -1.13
CCDC88C-209ENST00000554872 NREPQ16612 68 aa8.01□□□□□ -1.13
CCDC88C-209ENST00000554872 Q6ZVQ6 151 aa7.99□□□□□ -1.13
CCDC88C-209ENST00000554872 FSIP2Q5CZC0 6907 aa7.99□□□□□ -1.13
CCDC88C-209ENST00000554872 SPINK7P58062 85 aa7.98□□□□□ -1.13
CCDC88C-209ENST00000554872 MTURNQ8N3F0 131 aa7.97□□□□□ -1.13
CCDC88C-209ENST00000554872 MMP24-AS1A0A0U1RRL7 71 aa7.95□□□□□ -1.14
CCDC88C-209ENST00000554872 TMEM254Q8TBM7 123 aa7.95□□□□□ -1.14
CCDC88C-209ENST00000554872 MRPL34Q9BQ48 92 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-209ENST00000554872 SPCS1Q9Y6A9 102 aa7.91□□□□□ -1.14
CCDC88C-209ENST00000554872 K7EQZ3 153 aa7.9□□□□□ -1.14
CCDC88C-209ENST00000554872 hDV103S1A0JD37 113 aa7.89□□□□□ -1.15
CCDC88C-209ENST00000554872 MT2AP02795 61 aa7.89□□□□□ -1.15
CCDC88C-209ENST00000554872 BPY2O14599 106 aa7.88□□□□□ -1.15
CCDC88C-209ENST00000554872 COL5A1-AS1Q5SY13 56 aa7.87□□□□□ -1.15
CCDC88C-209ENST00000554872 SMCPP49901 116 aaPredicted RBP7.86□□□□□ -1.15
CCDC88C-209ENST00000554872 WFDC13Q8IUB5 93 aa7.86□□□□□ -1.15
CCDC88C-209ENST00000554872 PRO0461Q9UI25 63 aa7.83□□□□□ -1.16
CCDC88C-209ENST00000554872 MT1FP04733 61 aa7.82□□□□□ -1.16
CCDC88C-209ENST00000554872 K7EP34 96 aa7.8□□□□□ -1.16
CCDC88C-209ENST00000554872 NDUFS5O43920 106 aa7.78□□□□□ -1.16
CCDC88C-209ENST00000554872 KRTAP9-3Q9BYQ3 159 aa7.78□□□□□ -1.16
CCDC88C-209ENST00000554872 CASC2Q6XLA1 102 aa7.76□□□□□ -1.17
CCDC88C-209ENST00000554872 KRTAP10-10P60014 251 aa7.75□□□□□ -1.17
CCDC88C-209ENST00000554872 UBL5Q9BZL1 73 aa7.75□□□□□ -1.17
CCDC88C-209ENST00000554872 LINC00846Q9NV44 126 aa7.75□□□□□ -1.17
CCDC88C-209ENST00000554872 Q5W150 140 aa7.74□□□□□ -1.17
CCDC88C-209ENST00000554872 C7orf65Q6ZTY9 151 aa7.74□□□□□ -1.17
CCDC88C-209ENST00000554872 Q8N9L7 120 aa7.74□□□□□ -1.17
CCDC88C-209ENST00000554872 H1FX-AS1Q4G0G2 97 aa7.72□□□□□ -1.17
CCDC88C-209ENST00000554872 LCE2BO14633 110 aa7.71□□□□□ -1.18
CCDC88C-209ENST00000554872 CXCL6P80162 114 aa7.71□□□□□ -1.18
CCDC88C-209ENST00000554872 HCG22E2RYF7 251 aa7.7□□□□□ -1.18
CCDC88C-209ENST00000554872 GTF2H5Q6ZYL4 71 aa7.7□□□□□ -1.18
CCDC88C-209ENST00000554872 USH2AO75445 5202 aa7.69□□□□□ -1.18
CCDC88C-209ENST00000554872 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
CCDC88C-209ENST00000554872 IGKV2-30P06310 120 aa7.68□□□□□ -1.18
CCDC88C-209ENST00000554872 F8W1H4 67 aa7.67□□□□□ -1.18
CCDC88C-209ENST00000554872 SSPOA2VEC9 5147 aa7.63□□□□□ -1.19
CCDC88C-209ENST00000554872 ETDBQ3ZM63 59 aa7.59□□□□□ -1.19
CCDC88C-209ENST00000554872 TP53AIP1Q9HCN2 124 aa7.59□□□□□ -1.19
CCDC88C-209ENST00000554872 C4orf26Q17RF5 130 aa7.56□□□□□ -1.2
CCDC88C-209ENST00000554872 KRTAP19-1Q8IUB9 90 aa7.56□□□□□ -1.2
CCDC88C-209ENST00000554872 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.55□□□□□ -1.2
CCDC88C-209ENST00000554872 PCP4L1A6NKN8 68 aa7.54□□□□□ -1.2
CCDC88C-209ENST00000554872 ACYP1P07311 99 aa7.5□□□□□ -1.21
CCDC88C-209ENST00000554872 FAM240AA0A1B0GVK7 77 aa7.49□□□□□ -1.21
CCDC88C-209ENST00000554872 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
CCDC88C-209ENST00000554872 KRTAP3-1Q9BYR8 98 aa7.49□□□□□ -1.21
CCDC88C-209ENST00000554872 FCGBPQ9Y6R7 5405 aaPredicted RBP7.49□□□□□ -1.21
CCDC88C-209ENST00000554872 ATP5EP2Q5VTU8 51 aa7.46□□□□□ -1.22
CCDC88C-209ENST00000554872 KRTAP9-7A8MTY7 169 aa7.45□□□□□ -1.22
CCDC88C-209ENST00000554872 C1orf64Q8NEQ6 169 aa7.44□□□□□ -1.22
CCDC88C-209ENST00000554872 S4R3F8 94 aa7.42□□□□□ -1.22
CCDC88C-209ENST00000554872 TRAV22A0A0B4J277 110 aa7.4□□□□□ -1.22
CCDC88C-209ENST00000554872 CYP4F30PQ9H0H9 118 aa7.4□□□□□ -1.22
CCDC88C-209ENST00000554872 C5orf47Q569G3 176 aa7.39□□□□□ -1.23
CCDC88C-209ENST00000554872 CSAG1Q6PB30 78 aa7.38□□□□□ -1.23
CCDC88C-209ENST00000554872 LOC101927531A0A1B0GV80 90 aa7.37□□□□□ -1.23
CCDC88C-209ENST00000554872 LCA10Q71F78 164 aa7.37□□□□□ -1.23
CCDC88C-209ENST00000554872 UQCRQO14949 82 aa7.33□□□□□ -1.24
CCDC88C-209ENST00000554872 ATOX1O00244 68 aa7.3□□□□□ -1.24
CCDC88C-209ENST00000554872 LINC00643Q86TS7 51 aa7.3□□□□□ -1.24
CCDC88C-209ENST00000554872 KRTAP3-3Q9BYR6 98 aa7.3□□□□□ -1.24
CCDC88C-209ENST00000554872 FAM236AA0A1B0GUQ0 79 aa7.29□□□□□ -1.24
CCDC88C-209ENST00000554872 FAM236BA0A1B0GV22 79 aa7.29□□□□□ -1.24
CCDC88C-209ENST00000554872 HIST1H4AP62805 103 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-209ENST00000554872 SPRR2GQ9BYE4 73 aa7.29□□□□□ -1.24
CCDC88C-209ENST00000554872 H0Y9P7 68 aa7.24□□□□□ -1.25
CCDC88C-209ENST00000554872 KRTAP19-8Q3LI54 63 aa7.24□□□□□ -1.25
CCDC88C-209ENST00000554872 KLKP1Q107X0 134 aa7.23□□□□□ -1.25
CCDC88C-209ENST00000554872 A0A087WVE0 104 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms